BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0504.p
         (263 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981365|ref|YP_001354594.1| transcriptional regulator [Jant...   309   1e-85

>gi|152981365|ref|YP_001354594.1| transcriptional regulator
           [Janthinobacterium sp. Marseille]
          Length = 229

 Score =  309 bits (791), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/225 (70%), Positives = 185/225 (82%)

Query: 28  MRRADRLFQITQYLRGRRLTTARQLAQWLSVSERTVYRDIRDLSLSGVPVDGEAGVGYRI 87
           MRRA+RLFQI QYLRGRRLTTA QL++WL VSERT+YRDIRDLSLSGVP++GEAGVGYR+
Sbjct: 1   MRRAERLFQIAQYLRGRRLTTALQLSEWLYVSERTIYRDIRDLSLSGVPIEGEAGVGYRV 60

Query: 88  KPGYDLPPLMFNTDEIDALVIGMRMVQAWGGPQLAASAASALAKVVLALPKEKRDFVEAT 147
           K G+DL PLMF++DEI+ALV GMRMVQAWGGPQLAAS A+ALAK+ LALP+EKRDFVEAT
Sbjct: 61  KAGFDLQPLMFSSDEIEALVAGMRMVQAWGGPQLAASGAAALAKITLALPREKRDFVEAT 120

Query: 148 PLFAPAMQDDCGQGERLEAIRQAISSRHKLLLHYTDAQQRSSQRVVWPLGLAFFGGTWLL 207
           PLFAP    +   GERLE IRQAI  ++KL L Y DA+Q++S R +WPL L F+G  W +
Sbjct: 121 PLFAPDFHIEACHGERLENIRQAIGKQNKLRLDYIDAKQQASCRTIWPLALYFWGSGWSI 180

Query: 208 AAWCERREDFRSFRLDRVQQMRAQSHYPDRNGRRLNDFVRAMQRQ 252
           AAWCE R DFRSFRLDRVQ +     Y   +GRRL DFVRAM+R+
Sbjct: 181 AAWCETRSDFRSFRLDRVQALADGGPYAGVSGRRLADFVRAMKRE 225


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.136    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 571,293
Number of extensions: 21516
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 182
Effective length of database: 921,564
Effective search space: 167724648
Effective search space used: 167724648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 128 (53.9 bits)