BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0501.p (275 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 125 4e-30 gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 123 1e-29 gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [... 107 9e-25 gi|152982630|ref|YP_001355220.1| hypothetical protein mma_3530 [... 91 1e-19 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 89 2e-19 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 125 bits (313), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/185 (36%), Positives = 105/185 (56%), Gaps = 2/185 (1%) Query: 82 LEQRDDARSHLEEMEKTLARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMID 141 + +R + L +++K L + +D LTG+ANRR F+ L E+ A + L+II++D Sbjct: 126 INERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKRPLSIILLD 185 Query: 142 IDFFDEYNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALI 201 ID+F +YN YG + GD L++V + + +R D RFG +E ++LP + + AL Sbjct: 186 IDYFKQYNDHYGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALT 245 Query: 202 VAERIRKSIEQLNIEHSASP-SGRVTISIGIAAVAPQRQVDEPDTVLRESEQALALAKAS 260 VAER R I + I H S S +TIS+G+ V P DE + E+++ L LAK Sbjct: 246 VAERCRMLIFKEQIPHEKSAVSQLLTISLGVHTVIPSYG-DEALKFIEEADRRLYLAKQK 304 Query: 261 GRDCI 265 GR+CI Sbjct: 305 GRNCI 309 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/188 (37%), Positives = 112/188 (59%), Gaps = 11/188 (5%) Query: 84 QRDDARSHLEEMEKTLARVGLE-------DALTGLANRRQFERGLLEEFNRAARTNLSLA 136 QRD A L E ++ L + E D LTG+ANRR F+ L E+ RA R L+ Sbjct: 148 QRDAAYRALRESQQQLQKSNFELQRLTNTDGLTGIANRRYFDDYLSAEWKRARREQQELS 207 Query: 137 IIMIDIDFFDEYNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRL 196 I++ID+D F YN TYG +AGD VL++V ++ + +RP DL +RFG +E A++LP + Sbjct: 208 ILLIDVDNFKLYNDTYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGS 267 Query: 197 EGALIVAERIRKSIEQLNIEHSASPSGR-VTISIGIAAVAPQ-RQVDEPDTVLRESEQAL 254 GA+I +++ ++E L I H+ + G +T+S+G A + PQ QV P+ ++ +++ L Sbjct: 268 NGAVISGKKVCAAVEALRIPHAHAAIGEWLTVSVGAATITPQAEQV--PNDLIELADKRL 325 Query: 255 ALAKASGR 262 AK G+ Sbjct: 326 YRAKELGK 333 >gi|152982100|ref|YP_001354823.1| hypothetical protein mma_3133 [Janthinobacterium sp. Marseille] Length = 352 Score = 107 bits (266), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 67/170 (39%), Positives = 97/170 (57%), Gaps = 4/170 (2%) Query: 99 LARVGLEDALTGLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDEYNATYGRMAGD 158 L +GL D LTG+ NRR ER LLEE R R +L+ + ID+D F + N +G GD Sbjct: 180 LQHIGLTDPLTGVNNRRYVERRLLEEVGRTQRHGYALSGMYIDLDHFKKVNDNFGHQGGD 239 Query: 159 KVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIEQLNIEHS 218 +VL V + I+ +R D L RFG +E VLL + L+ AL+VAERIR S+ + I S Sbjct: 240 EVLCEVANRIK-AELRLSDALGRFGGEEFVVLLIDAPLDAALVVAERIRASVSERPIVLS 298 Query: 219 ASPSGRVTISIGIAAVAPQRQVDE---PDTVLRESEQALALAKASGRDCI 265 + R T+SIG+A++ + D +L +++ AL AK GR+ + Sbjct: 299 SGEELRATVSIGVASLNTADRQDSAAVAQQLLAKADLALYQAKKEGRNKV 348 >gi|152982630|ref|YP_001355220.1| hypothetical protein mma_3530 [Janthinobacterium sp. Marseille] Length = 356 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 34/187 (18%) Query: 106 DALTGLANRRQFERGLLEEFNR--AARTNLSLA-------------------IIMIDIDF 144 D+LTGL NR+ F+ E+F R A+ + S+A + +IDID Sbjct: 158 DSLTGLLNRKTFD----EKFARMVNAKPSESVARDDEGREERRHHADVKSQWLAVIDIDH 213 Query: 145 FDEYNATYGRMAGDKVLRRVGSAIRDTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAE 204 F N +G + GD+VL V + +R T+ R +D + RFG +E VLL + L A +V E Sbjct: 214 FKRVNDQFGHLYGDEVLILVANVLR-TSFRAQDRVFRFGGEEFVVLLRSATLADAQMVFE 272 Query: 205 RIRKSIEQLNIEHSASPSGRVTISIGIAAVAPQRQVDEPDTVLRESEQALALAKASGRDC 264 R R SIEQ HS G++T+SIG A+++ + P +L ++QAL AK GR+ Sbjct: 273 RFRTSIEQ----HSFPQIGQITVSIGFASISQET----PVVILGHADQALYYAKDHGRNQ 324 Query: 265 IRTTEDL 271 + ++L Sbjct: 325 VCYYDEL 331 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 89.4 bits (220), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 73/217 (33%), Positives = 111/217 (51%), Gaps = 25/217 (11%) Query: 61 LQPLAALETDLQQMQQQHQQMLEQRDDA-----------RSHLEEMEKTLARVGLEDALT 109 LQ AA + ++Q Q ++ + + +DD R +E E+ L+RV DALT Sbjct: 396 LQNEAAEKAIIEQKLQSNELLRQAKDDLERIVSERTAELRKARDEAER-LSRV---DALT 451 Query: 110 GLANRRQFERGLLEEFNRAARTNLSLAIIMIDIDFFDEYNATYGRMAGDKVLRRVGSAIR 169 G NRR F EF + R + L++I DID F + N YG AGD+V++ R Sbjct: 452 GAFNRRYFNEVAALEFAKVRRLHQPLSVISFDIDLFKQINDNYGHAAGDEVIKAAARVSR 511 Query: 170 DTNVRPEDLLSRFGAQEIAVLLPGSRLEGALIVAERIRKSIEQLNIEHSASPSGRV---T 226 + VR D ++R G +E A+LLPGS +E A AER+R +L I S G++ T Sbjct: 512 NA-VREIDFVARIGGEEFAILLPGSTIEQAAATAERLR----ELVIAEQVSYQGKLLAFT 566 Query: 227 ISIGIAAVAPQRQVDEPDTVLRESEQALALAKASGRD 263 S G+A + Q E +L+ +++ + AK GR+ Sbjct: 567 ASFGVAQLKDSDQSFE--ALLQRADEMMYRAKNLGRN 601 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.133 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 445,434 Number of extensions: 16857 Number of successful extensions: 111 Number of sequences better than 1.0e-08: 27 Number of HSP's gapped: 85 Number of HSP's successfully gapped: 27 Length of query: 275 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 193 Effective length of database: 917,867 Effective search space: 177148331 Effective search space used: 177148331 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)