BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0497.p (550 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981373|ref|YP_001352217.1| aerotaxis sensor receptor (chem... 607 e-175 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 305 5e-84 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 298 6e-82 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 297 1e-81 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 292 4e-80 >gi|152981373|ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] Length = 555 Score = 607 bits (1564), Expect = e-175, Method: Compositional matrix adjust. Identities = 319/522 (61%), Positives = 398/522 (76%), Gaps = 3/522 (0%) Query: 1 MRTNLPITTIERLLEDGKSIVSKTDLQGNITYVNPYFVEISGFEEVELIGAPQNIVRHPE 60 MRTNLP+T+ E L+DG S+VSKTD +G ITYVNP F+E SGF+E ELIG P N++RHP+ Sbjct: 1 MRTNLPVTSNEYFLQDGSSLVSKTDTKGRITYVNPAFMEASGFQEEELIGKPHNLIRHPD 60 Query: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 MP EAF DMW TLKEGLPW GLVKNR KNGD+YWV ANVTPVREN V +MSVR++P+R Sbjct: 61 MPEEAFGDMWQTLKEGLPWTGLVKNRRKNGDFYWVNANVTPVRENNEIVAFMSVRSKPNR 120 Query: 121 EQVQAAENAYRRFVAGQARGLRIHRGAVASTGIMGWLQGLRDLSMAKRLAWMMSILTLLV 180 EQV+ A+ Y RF A QA+GL I RGAV STGI G L LRD+ + ++A M L L+ Sbjct: 121 EQVEGADAIYARFKADQAKGLAIRRGAVVSTGIFGKLAALRDIGLGSKIALGMMTLIALI 180 Query: 181 ITGGLAAGSAVQSAGGSPYAIWLG-TLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLAG 239 G A +AV++A + + G T AG + L WA LHAS+V PL+ I +AG Sbjct: 181 AALGFVATTAVENAARMGW--YAGATAAGVCVALLLWASLHASVVRPLRTLIAETRVIAG 238 Query: 240 GDLDLHIDTTAHGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSR 299 GDL H DMG L QALQQ+NVNLR+++GD+R NV+S+TI+T EIA+GNMDLS R Sbjct: 239 GDLTFDFAVDRHDDMGQLQQALQQMNVNLRSVMGDIRTNVDSITIATREIAAGNMDLSGR 298 Query: 300 TESQASALEETASSVEQFAATVRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEI 359 TESQAS+LEETASS+EQFA+TV+QNADSAS A+ Q+AS +A +G A V+++G TMDEI Sbjct: 299 TESQASSLEETASSMEQFASTVKQNADSASQANELVQSASEVAGKGGAVVEKVGATMDEI 358 Query: 360 DAASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAA 419 A++ KIVDII LIDGI+FQTNILALNAAVEAARAGEQG+GFAVVASEVR+LAQRSA+AA Sbjct: 359 SASAKKIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRSASAA 418 Query: 420 KDIKSLIDDSRAKVESGNLLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLN 479 K+IK LIDDS KV++GN LV + M ++ +V+ + M EITVAS EQS GI+Q+N Sbjct: 419 KEIKGLIDDSVEKVDAGNRLVSDAMTTMDDIVSSVQRVTGIMNEITVASREQSNGIDQVN 478 Query: 480 QAVNAIDETTQQNAALVEQAAAAAENLRDQSIKLSQAVSVFR 521 A++ +DE TQQNAALVE+AAAAA +L +Q+ L+Q++SVFR Sbjct: 479 LAISQMDEVTQQNAALVEEAAAAAASLEEQTFHLTQSISVFR 520 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 305 bits (780), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 186/352 (52%), Positives = 254/352 (72%), Gaps = 7/352 (1%) Query: 194 AGGSPYAIWLGTLAGTLLLLGSWAILHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGD 253 A G I LG++A L +W +L SI PL A+ +A GDL I ++++ + Sbjct: 188 ASGRTILITLGSIALILSAFLAW-LLSRSITRPLDYAVSVARTVASGDLRNKIQSSSNDE 246 Query: 254 MGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASS 313 G LL+AL+ +N L + VR +E++ ++ +IA+GN+DLSSRTE QAS+LEETASS Sbjct: 247 TGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNLDLSSRTEEQASSLEETASS 306 Query: 314 VEQFAATVRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLI 373 +E+ +TV+QNAD+A A++ A +AS +A++G V R+ TM++I+A++ KIVDIIG+I Sbjct: 307 MEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVDTMEQINASAKKIVDIIGVI 366 Query: 374 DGISFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKV 433 DGI+FQTNILALNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAAK+IK+LI DS KV Sbjct: 367 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKV 426 Query: 434 ESGNLLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNA 493 E G+ LV E M E+ +V+++ M+EI AS EQS GIEQ+NQA+ +D+ TQQNA Sbjct: 427 ELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNA 486 Query: 494 ALVEQAAAAAENLRDQSIKLSQAVSVFRITYVSAGPTTTAASAPALRRKEGT 545 ALVE+AAAAAE+L +Q+ KL++AVSVF++ + TAA+AP+ + GT Sbjct: 487 ALVEEAAAAAESLNEQAAKLAEAVSVFKLDSI------TAAAAPSKKVNVGT 532 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 298 bits (763), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 173/322 (53%), Positives = 232/322 (72%), Gaps = 2/322 (0%) Query: 203 LGTLAGTLLLLGSWAI--LHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQA 260 L L+ +L G + L I PL+ A+ A +AGGDL I + + G LL A Sbjct: 193 LMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAA 252 Query: 261 LQQLNVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAAT 320 L+ +N L+ I+G+VR E++T ++ EIA+GN+DLSSRTE QAS+LEETASS+E+ +T Sbjct: 253 LKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTST 312 Query: 321 VRQNADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQT 380 V+QNAD+A A++ A +AS +A +G V ++ +TM I+ +S KIVDII +IDGI+FQT Sbjct: 313 VKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQT 372 Query: 381 NILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLLV 440 NILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAK+IK+LI DS KV++GN LV Sbjct: 373 NILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLV 432 Query: 441 RETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAA 500 E M E+ ++ + M EIT AS EQS GIEQ+NQA+ +D TQQNA+LVE+AA Sbjct: 433 AEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAA 492 Query: 501 AAAENLRDQSIKLSQAVSVFRI 522 AAAE+++DQ+ KL Q V F++ Sbjct: 493 AAAESMQDQARKLGQVVGAFKL 514 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 297 bits (760), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 174/313 (55%), Positives = 228/313 (72%) Query: 210 LLLLGSWAILHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQALQQLNVNLR 269 LL +G ++ SI PL A+ +A GDL I+ + + G LLQAL+ +N +L Sbjct: 197 LLSIGLGIVISRSITRPLNEAVLVAQTVASGDLTSQINVKSKDETGQLLQALKDMNQSLI 256 Query: 270 AIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAATVRQNADSAS 329 I+ +VR +M ++ +IASGNMDLSSRTE QAS+LEETASS+E+ +TV+QNAD+A Sbjct: 257 GIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVKQNADNAR 316 Query: 330 NADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQTNILALNAAV 389 A+ + +AS IA +G V + TM+ I+ ++ KI DIIG+IDGI+FQTNILALNAAV Sbjct: 317 QANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNILALNAAV 376 Query: 390 EAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLLVRETAQAMGE 449 EAARAGEQGRGFAVVASEVR LAQRSAAAAK+IK+LIDDS +V++G+ LV + M E Sbjct: 377 EAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQAGSTMTE 436 Query: 450 LGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAAENLRDQ 509 + +V+ + MAEI AS EQS GIEQ+NQA+ +D TQQNAALVE+AAAAA +L+DQ Sbjct: 437 VVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAAAGSLKDQ 496 Query: 510 SIKLSQAVSVFRI 522 ++KL Q VSVF+I Sbjct: 497 AVKLEQTVSVFKI 509 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 292 bits (747), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 209/498 (41%), Positives = 300/498 (60%), Gaps = 27/498 (5%) Query: 40 ISGFEEVELIGAPQNIVRHPEMPREAFADMWATLKEGLPWNG---LVKNRCKNGD---YY 93 + G ++ +G +++ +P+E A W + + NG L + + + ++ Sbjct: 28 VVGILRLQEVGTSADVMTQTMLPKERLAQEWLS---AVDVNGARTLASAKTTSAEDQAFF 84 Query: 94 WVQANVTPVRENGRAVGYMSVRTRPSR----EQVQAAENAYRRFVAGQARGLRIHRGAVA 149 Q + T VR N S+ P E++ A NAYR +R + Sbjct: 85 QKQMDKTSVRANELQKEIESMIKTPEDKRLFEELVVARNAYR--------DIRQTVFKLK 136 Query: 150 STGIMGWLQGLRDLSMAKRL-AWMMSILTLLVITGGL--AAGSAVQSAGGSPYAIWLGTL 206 + G + Q L + M + A+ SI +L L AG+++QSA S ++ +G L Sbjct: 137 AEGKLPEAQLLINEKMLPAMNAYSNSIDAVLQNEKKLIDEAGTSIQSAFLSGRSLLIGLL 196 Query: 207 AGTLLL--LGSWAILHASIVAPLQRAIKAVHGLAGGDLDLHIDTTAHGDMGLLLQALQQL 264 A + L +W L SI PL RA+ +A GDL I+ +++ + G L+QAL+ + Sbjct: 197 AAAVALGVFFAWR-LAISITRPLNRAVTVARTVASGDLSAKIEVSSNDETGQLMQALKDM 255 Query: 265 NVNLRAIIGDVRRNVESMTISTGEIASGNMDLSSRTESQASALEETASSVEQFAATVRQN 324 +L + +VR E++ ++ +IASGN+DLSSRTE QAS+L ETA+S+ Q +TVRQN Sbjct: 256 TQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETAASMGQLTSTVRQN 315 Query: 325 ADSASNADRQAQTASAIAQRGSASVQRMGKTMDEIDAASHKIVDIIGLIDGISFQTNILA 384 AD+A A+ A +AS +A +G + V + TM I+ ++ KIVDII +IDGI+FQTNILA Sbjct: 316 ADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIISVIDGIAFQTNILA 375 Query: 385 LNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAKDIKSLIDDSRAKVESGNLLVRETA 444 LNAAVEAARAGEQGRGFAVVASEVR LAQRSAAAAK+IK LI DS KVE+G+ LV E Sbjct: 376 LNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVGKVEAGSKLVNEAG 435 Query: 445 QAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQAVNAIDETTQQNAALVEQAAAAAE 504 M E+ +V+ + MAEI AS EQS GI+Q+NQA+ +D+ TQQNAALVE+AAAAAE Sbjct: 436 STMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQNAALVEEAAAAAE 495 Query: 505 NLRDQSIKLSQAVSVFRI 522 +L+DQ+ L++ VS F++ Sbjct: 496 SLQDQAGNLARVVSQFKL 513 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.128 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 962,394 Number of extensions: 33805 Number of successful extensions: 244 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 192 Number of HSP's successfully gapped: 21 Length of query: 550 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 462 Effective length of database: 895,685 Effective search space: 413806470 Effective search space used: 413806470 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)