BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0496.p
         (237 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981489|ref|YP_001355336.1| GMP synthase (glutamine-hydroly...   132   2e-32

>gi|152981489|ref|YP_001355336.1| GMP synthase
           (glutamine-hydrolyzing) [Janthinobacterium sp.
           Marseille]
          Length = 255

 Score =  132 bits (332), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/175 (41%), Positives = 101/175 (57%), Gaps = 2/175 (1%)

Query: 7   IRHVHFEDLGILHEVLREQAYALTYLDACIDDLDTPLVQQADLLIVLGGPIGAYDDARYP 66
           ++HV FE LG + E L+++  +++Y     +    P +   DL+I LGGP+   D+   P
Sbjct: 31  LQHVPFEGLGSIEEWLQQRNMSISY-TRLFESASFPPLDGIDLIIALGGPMSVNDEEELP 89

Query: 67  FLASELAAITRRLMRGAPTLGICLGAQLMARALGADVAPMGVKEIGYAPLSLTEAGRHSP 126
           +L +E   I   +      LGICLG+QL+A ALGA V P   KEIG+ P+ + E      
Sbjct: 90  WLRAEKFFIADAIASHKAVLGICLGSQLIANALGAKVYPAAEKEIGWFPI-VAEPAMLDA 148

Query: 127 LAALEDVPVLHWHGDRFEIPAQATHLAGSALCAQQAFAVGRQVLALQFHLEADPK 181
           LA    V V HWHG+ F++P  A HLA SA C  QAF VG +V+ LQFHLE  P+
Sbjct: 149 LAFPASVDVFHWHGETFDLPEGAIHLASSAACRNQAFQVGTRVIGLQFHLETTPE 203


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 602,778
Number of extensions: 25840
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 157
Effective length of database: 925,261
Effective search space: 145265977
Effective search space used: 145265977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)