BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0495.p (433 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980994|ref|YP_001352392.1| transcriptional regulator [Jant... 74 1e-14 gi|152981206|ref|YP_001352388.1| GntR family transcriptional reg... 65 9e-12 gi|152980987|ref|YP_001354760.1| GntR family transcriptional reg... 63 4e-11 gi|152981144|ref|YP_001352922.1| GntR family transcriptional reg... 59 7e-10 gi|152979817|ref|YP_001353073.1| AspB aspartate aminotransferase... 57 2e-09 >gi|152980994|ref|YP_001352392.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 397 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 74/276 (26%), Positives = 120/276 (43%), Gaps = 8/276 (2%) Query: 147 LTHGAVDAIERLLAAHLRHGDKVAVEDPCFLASINLLRSSGWQSVGVGMDEQGMLPEALQ 206 + G+ A++ L + KV VE P +L ++ Q V V D+ G+LPEA+ Sbjct: 104 MVSGSQQALDLLGKVLIEENSKVLVETPSYLGALQAFSVYQPQFVSVPTDDYGLLPEAVD 163 Query: 207 AALNRGVQALILTPRAHNPTGASLSRRRARALSAILEKHPHVLVIVDDHFALLS--GQPY 264 + G + L P HNPTG ++S R AL + + +I DD + LS +P Sbjct: 164 -GIADGARLLYALPNFHNPTGRTMSVERRIALVETCARR-GLPLIEDDPYGALSYRAEPL 221 Query: 265 HSVIPRQASRWALVRSFSKALGPDVRVAAVASDAATSRLLRTRLSAGSNWVSHFLQDAIE 324 ++ S + SFSK L P +R+ V R L A S Q + Sbjct: 222 PKMLTMNPSGVIYMGSFSKVLTPGIRLGYVVGPTPLIRKLEQAKQAADLHTSQLTQMVVY 281 Query: 325 FIITQPETAGLMQRARSAYGLCRQHLESALA--AQDIACWSQGD-GLNLWLPLPLSID-D 380 I A + R+ Y Q + ALA A + W++ + G+ +W+ LP ID Sbjct: 282 EAIKDGFLAEHIPSIRTLYANQCQVMLDALAEFAPEGVKWNKPEGGMFIWVTLPKHIDCM 341 Query: 381 QAVALAMARQGWLVRPGSVFAVQQAVSGLRITVSTL 416 Q + A+A++ V +A + + LR++ T+ Sbjct: 342 QLLEEAIAQKVAFVPGAPFYANEPEKNTLRLSFVTV 377 >gi|152981206|ref|YP_001352388.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 488 Score = 65.1 bits (157), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 98/445 (22%), Positives = 177/445 (39%), Gaps = 45/445 (10%) Query: 11 IFECVRALVQTQRLQAGQALPPVRELAEQLGLNRNTVAAAYRRLATAGIAITQGRLGTVI 70 I + + + + + L+ G +P +R+ ++Q ++R TV AY RL G+ ++ G + Sbjct: 34 IVQLITSRIDDKILRTGARMPSIRQFSDQHQVSRFTVVEAYDRLVAGGLLESRRGSGFYV 93 Query: 71 R------APAAPGEEEGSQGDTALTDLA---------DGNPNPAWLPD-------LAQTW 108 R P A G + +Q + L P LP+ +A Sbjct: 94 RDRAPMLTPRAQGLQSAAQQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDGDLVANAL 153 Query: 109 RSIAYQ-PRL---YGAPTVNAGL---AQFMMQWCRPDCPPEFELDLTHGAVDAIERLLAA 161 R+++ Q P L YG P L Q M P+ + T G ++ + Sbjct: 154 RAVSRQNPNLLLQYGIPQGFLPLRQQLQLKMAELEISATPD-QFVTTAGVTQGLDLVARH 212 Query: 162 HLRHGDKVAVEDPCFLASINLLRSSGWQSVGVGMDEQGMLPEALQ----AALNRGVQALI 217 +++ GD + V+DP + + G + VG+ G P+ Q A L+R + I Sbjct: 213 YIQPGDTIFVDDPGWFLMFGSFAALGAKVVGIPRLPDG--PDIAQLTALAELHRP-KLFI 269 Query: 218 LTPRAHNPTGASLSRRRARALSAILEKHPHVLVIVDDHFALLSGQPYHSVIP----RQAS 273 + HNPT SLS +A + I E++ ++V D + + G + Q + Sbjct: 270 INSILHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGAAVQAATRIAALDQLN 329 Query: 274 RWALVRSFSKALGPDVRVAAVASDAATSRLLRTRLSAGSNWVSHFLQDAIEFIITQPETA 333 R + FSK L ++RV +A+ +R L R + + + + I+++ Sbjct: 330 RVIYLGGFSKTLAANLRVGFIATSPEIARQLADRKMLTALTTTEITERVVYRILSEGHYR 389 Query: 334 GLMQRARSAYGLCRQHLESALAAQDIAC-WSQGDGLNLWLPLPLSIDDQAVALAMARQGW 392 R R+ R + I + G+ W + D +A QG+ Sbjct: 390 KHTDRLRTKLNAVRDKTIRQMERIGIKIHFHTPAGMFAW--TDVGCDATILAEKAMEQGY 447 Query: 393 LVRPGSVFAVQQAVS-GLRITVSTL 416 L+ PGS+F+ Q S +R V+ + Sbjct: 448 LLAPGSLFSPNQLPSTNMRFNVAAM 472 >gi|152980987|ref|YP_001354760.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 473 Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 112/477 (23%), Positives = 187/477 (39%), Gaps = 55/477 (11%) Query: 1 MKIQGKTAADIFECVRALVQTQRLQAGQALPPVRELAEQLGLNRNTVAAAYRRLATAGIA 60 MK+ AA++ + + Q L+ G LP VR+ + ++ +TV AY L G+ Sbjct: 1 MKLYETLAAELAQSI----QDGVLRIGDRLPSVRQASTSRAVSPSTVFQAYYLLEARGLI 56 Query: 61 ITQGRLGTVIRAPA---APGEEEGSQGDTA---------------------LTDLADGNP 96 + R G + A P E+ SQ + A L P Sbjct: 57 RARERSGYYVAGAAQKLPPEPEQASQPNEASSPVDISERVFEVLESAKMRELVPFGSAFP 116 Query: 97 NPAWLPDLAQTWRSIAYQPRLY-----------GAPTVNAGLA-QFMMQWCRPDCPPEFE 144 +P P +A+ R++A + G P + +A +++ E Sbjct: 117 SPLLFP-MARLARAMASSVQQLDPWSAVDDLTPGNPQLRRQIALRYLADGLHIHTD---E 172 Query: 145 LDLTHGAVDAIERLLAAHLRHGDKVAVEDPCFLASINLLRSSGWQSVGVGMD-EQGMLPE 203 + +T+GA+DA+ LAA R GD V VE P F A++ L +G ++ V +G+ Sbjct: 173 IVITNGALDALNLCLAAVTRPGDAVLVESPTFYAALQALERNGLHAIEVPTHPREGIDLA 232 Query: 204 ALQAALNRG-VQALILTPRAHNPTGASLSRRRARALSAILEKHPHVLVIVDDHFALLSGQ 262 AL A+ R +A L NP G+ + + R L +L +H + +I DD + L Sbjct: 233 ALARAIERHQPKACWLMTTFQNPLGSLMPDEKKRDLVTLLAQH-EIPLIEDDVYGELYFG 291 Query: 263 PYHSVIPRQASRWALV---RSFSKALGPDVRVAAVASDAATSRLLRTRLSAGSNWVSHFL 319 + + LV SFSK L P RV A T + R +L+ + Sbjct: 292 DKRPMPAKAFDSKGLVMHCSSFSKCLAPGYRVGWAAPGRFTRAVARRKLTTTLAASAPAQ 351 Query: 320 QDAIEFIITQPETAGLMQRARSAYGLCRQHLES---ALAAQDIACWSQGDGLNLWLPLPL 376 ++ L Q + Q +E+ + A A +G G LWL LP Sbjct: 352 AALATYLEKGGYDKHLRQLRHTLSVQQTQFMEAIARSFPAGTQATRPKG-GYFLWLELPA 410 Query: 377 SIDDQAVALAMARQGWLVRPGSVFAVQQAVSG-LRITVSTLDEDLSQALAADLRQCL 432 ++ + QG + PG +F+ + +R+ + + S+A A L Q + Sbjct: 411 KVNALELHRQALAQGISLAPGPIFSAHHGFTNCIRLNYGHVWDARSEAALASLGQLV 467 >gi|152981144|ref|YP_001352922.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 477 Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 114/461 (24%), Positives = 194/461 (42%), Gaps = 49/461 (10%) Query: 11 IFECVRALVQTQRLQAGQALPPVRELAEQLGLNRNTVAAAYRRLATAGIAITQGRLGTVI 70 I + + ++ L AG +P VR LA ++ L R TV AYR L G +G GT++ Sbjct: 24 ICQRFKTAIERGHLHAGDRVPAVRALATEMNLARGTVEMAYRILTDEGYLQVRGAAGTIV 83 Query: 71 RA----PAA--PGEEEGSQGDTALTDLADGNPNPAWL--PDL----AQTWRSIAYQPRLY 118 PAA P Q +A D P P L P L + W + RL Sbjct: 84 SPSLPQPAASKPLTPMPGQTVSAFLDHDGKAPKPLQLGLPALDAFPRKVWNRLVGH-RLR 142 Query: 119 GAPTVNAG-------------LAQFMMQWCRPDCPPEFELDLTHGAVDAIERLLAAHLRH 165 G+ G +A ++ C PE ++ +T G + +E L++ Sbjct: 143 GSEPARLGYPDPAGYDRLRERIATYLGVSRGVTCLPE-QVFITTGLRNTLELTLSSLSTS 201 Query: 166 GDKVAVEDPCFLASINLLRSSGWQSVGVGMDEQGMLPEALQAALNRGVQALILTPRAHNP 225 GD+ EDP ++ + L+++ + V V +D G++ E + L+ + ++TP +P Sbjct: 202 GDEFWFEDPGYILARPFLQNAAVKVVPVPVDGNGLIVEEGK-RLSPYAKFAMVTPSHQSP 260 Query: 226 TGASLSRRRARALSAILE--KHPHVLVIVDDHFALLSGQ----PYHSVIPRQASRWALVR 279 G +LS R AL LE +I DD+ + Q P + R R Sbjct: 261 LGVTLSLERRMAL---LEWASEAGSWIIEDDYDSEFRYQGRPLPALKSLDRN-DRVIYSG 316 Query: 280 SFSKALGPDVRVA-AVASDAATSRL--LRTRLSAGSNWVSHFLQDAIEFIITQPETAGLM 336 +FSK + P +R+A VA +A +R + L+AG ++ Q ++ I + + + Sbjct: 317 TFSKVMFPGLRLAYVVAPVSAVARFQSVSYNLNAGCPYL---FQASVADFIAEGHFSRHL 373 Query: 337 QRARSAYG---LCRQHLESALAAQDIACWSQGDGLNLWLPLPLSIDDQAVALAMARQGWL 393 ++ RS Y L Q + + I + GL++ L +D +A G Sbjct: 374 KKMRSLYAERRLVTQQVFQEVLGDRIRIDLRPGGLHMLAKLGEHENDVLLADKAREAGLA 433 Query: 394 VRPGSVFAVQ-QAVSGLRITV-STLDEDLSQALAADLRQCL 432 + P S + V + GL + + +DE ++ +A L+Q L Sbjct: 434 LHPLSRWYVNAKPQQGLLLGFANVVDEKDAKRIALKLKQAL 474 >gi|152979817|ref|YP_001353073.1| AspB aspartate aminotransferase [Janthinobacterium sp. Marseille] Length = 393 Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 105/224 (46%), Gaps = 9/224 (4%) Query: 115 PRLYGAPTVNAGLAQFMMQWCRPDCPPEFELDLTHGAVDAIERLLAAHLRHGDKVAVEDP 174 P + GAP + +A+ + P E+ +T GA A+ + +R GD+V V +P Sbjct: 70 PLMTGAPALREAIAKKIAALYGYHYHPHNEITVTAGATQALLTAIHCCIRPGDEVIVIEP 129 Query: 175 CFLASINLLRSSGWQSVGVGM--DEQG-MLPEALQAALNRGVQALILTPRAHNPTGASLS 231 F + + + +G ++V V M D+ G ++P A AA LI+ HNPTG+ L Sbjct: 130 AFDSYLPAIALAGGKAVCVQMELDDNGYIVPWAKVAAAVSSKTRLIMINSPHNPTGSVLL 189 Query: 232 RRRARALSAILEKHPHVLVIVDDHFA--LLSGQPYHSVI--PRQASRWALVRSFSKALG- 286 +AL+ I+ + +L++ D+ + + G P+ SV P A+R +V SF K Sbjct: 190 PADMQALADIV-RGSDILLLSDEVYEHMVYDGIPHESVSRHPELAARTFVVSSFGKTYHV 248 Query: 287 PDVRVAAVASDAATSRLLRTRLSAGSNWVSHFLQDAIEFIITQP 330 ++ VA+ AA + R V+ +Q AI + P Sbjct: 249 TGWKIGYVAAPAALTAEFRKVHQYNVFSVNTPMQHAIAHYMADP 292 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.133 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 980,374 Number of extensions: 39362 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 5 Length of query: 433 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 347 Effective length of database: 903,079 Effective search space: 313368413 Effective search space used: 313368413 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)