BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0494.p
         (280 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981077|ref|YP_001353697.1| hypothetical protein mma_2007 [...   377   e-106
gi|152980093|ref|YP_001352031.1| hypothetical protein mma_0341 [...   130   7e-32

>gi|152981077|ref|YP_001353697.1| hypothetical protein mma_2007
           [Janthinobacterium sp. Marseille]
          Length = 267

 Score =  377 bits (967), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/248 (75%), Positives = 207/248 (83%)

Query: 27  HGRWPQATTVEDFRHNLAATQQRIVAACARVGRDPASVRLLPVSKTKSQAAIRLAYAAGC 86
           HGR+P ATTVEDF  NL A Q RI AAC  VGRDPA VRLLPVSKTK +A++RLAYAAGC
Sbjct: 11  HGRYPAATTVEDFIRNLTAVQLRIAAACRCVGRDPAEVRLLPVSKTKPEASLRLAYAAGC 70

Query: 87  RMLGENKPQEAWQKWQALQDLPDLQWSVIGHLQTNKAKLVARFASEFQALDSLRLAEVLE 146
           R LGENK QEA  KW+A+QDL DL WSVIGHLQTNKAKLVARFA+EFQALDSLRLAE L+
Sbjct: 71  RTLGENKVQEAHHKWEAMQDLTDLHWSVIGHLQTNKAKLVARFATEFQALDSLRLAEALD 130

Query: 147 RRLQIEGRGLDVLVQVNTSGEASKYGLEPDQVAPFLRQLRAFPALRLRGLMTLAVLSAEP 206
           RRLQIEGR LDV VQVNTSGEASKYGL P  VA F++ L ++ ALR+RGLMTLA+ S+E 
Sbjct: 131 RRLQIEGRSLDVFVQVNTSGEASKYGLAPADVAAFVQALPSYSALRVRGLMTLALFSSEE 190

Query: 207 ERVRPCFARLRQLRERLRQELPDGALLQDLSMGMSGDAEIAIEEGATVVRVGQAIFGARD 266
           ERVR CF  LR LRE+LRQ  P G  L +LSMGMSGD EIAIEEGATVVRVGQAIFGAR 
Sbjct: 191 ERVRQCFFLLRTLREQLRQSAPAGISLDELSMGMSGDFEIAIEEGATVVRVGQAIFGARP 250

Query: 267 VPDSHYWP 274
           +PDS+YWP
Sbjct: 251 MPDSYYWP 258


>gi|152980093|ref|YP_001352031.1| hypothetical protein mma_0341
           [Janthinobacterium sp. Marseille]
          Length = 234

 Score =  130 bits (328), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 94/231 (40%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 39  FRHNLAATQQRIVAACARVGRDPASVRLLPVSKTKSQAAIRLAYAAGCRMLGENKPQEAW 98
            R NL A +QRI  A     RD   V LL VSKT    A+  A  AG    GEN  QEA 
Sbjct: 4   IRQNLQAVRQRITDAANSARRDVHGVELLAVSKTFGAEAVIAAAEAGQGAFGENYLQEAL 63

Query: 99  QKWQALQDL-PDLQ--WSVIGHLQTNKAKLVARFASEFQALDSLRLAEVLERRLQIEGRG 155
           +K   ++   PDLQ  W  IG +Q+NK + +A       ++D  ++A+ L  +       
Sbjct: 64  EKIAEVKATRPDLQLEWHFIGPIQSNKTRPIAENFDWVHSVDREKIAQRLSEQRPAHLPP 123

Query: 156 LDVLVQVNTSGEASKYGLEPDQVAPFLRQLRAFPALRLRGLMTLAVLSAEPERVRPCFAR 215
           L++ +QVN SGEASK G+ P +     + + A P L LRGLM +     + E+ R  F +
Sbjct: 124 LNICLQVNISGEASKSGVLPSEALAVAQAIAALPRLCLRGLMAIPEAVGDAEQQRAPFRQ 183

Query: 216 LRQLRERLRQELPDGALLQDLSMGMSGDAEIAIEEGATVVRVGQAIFGARD 266
           +  L E+LR E   G  L  LSMGMSGD + AI EGAT+VR+G AIFG R+
Sbjct: 184 MHALLEQLRAE---GLKLDTLSMGMSGDMDAAIAEGATIVRIGSAIFGTRE 231


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.133    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 635,723
Number of extensions: 23777
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 280
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 198
Effective length of database: 917,867
Effective search space: 181737666
Effective search space used: 181737666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)