BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0485.p
         (239 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981154|ref|YP_001354618.1| tRNA (guanine-N7-)-methyltransf...   380   e-107

>gi|152981154|ref|YP_001354618.1| tRNA
           (guanine-N7-)-methyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 238

 Score =  380 bits (975), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 180/237 (75%), Positives = 200/237 (84%), Gaps = 3/237 (1%)

Query: 2   SENKAGKPLFYDPSERRIRSFVTRAGRVSVAQGRALEELGPRFLVPYEKAPLDLAATFGR 61
           + +   KPLFYDP+E RIRSFVTRAGR+S AQ RA+EELGP+F +PY KAPLD    FGR
Sbjct: 5   TADDGKKPLFYDPTEHRIRSFVTRAGRLSTAQARAIEELGPQFFIPYAKAPLDSEQAFGR 64

Query: 62  QAPTILEIGFGMGETSAKISALMPEKNFIGVEVHTPGVGSYLKLIGEGELDNVRIIQHDA 121
            APTI EIGFGMGET+AKI+A MPEKNFIGVEVHTPGVGS LKLIGE  L N+RIIQHDA
Sbjct: 65  NAPTIFEIGFGMGETTAKIAAGMPEKNFIGVEVHTPGVGSLLKLIGEQGLSNLRIIQHDA 124

Query: 122 VEVLTNMIAPATLAGVHVFFPDPWHKARHNKRRLIQSPLVQLISSRLAPGGYIHCATDWE 181
            EVLTNMI P +LAGVHVFFPDPWHKARHNKRRLIQ PLV L+SSR+  GGY+HCATDW+
Sbjct: 125 FEVLTNMIEPESLAGVHVFFPDPWHKARHNKRRLIQPPLVALLSSRIKKGGYLHCATDWQ 184

Query: 182 EYAVQMLEVLSAEPTLKNTATDPSGYVPRPEYRDTTKFENRGLRLGHGVWDLVFEKR 238
           EYA QMLEVL  EP+L+NTA    GY PRP+YR  TKFENRGL+LGHGVWDLVFEK+
Sbjct: 185 EYAEQMLEVLGGEPSLQNTA---EGYAPRPDYRPVTKFENRGLKLGHGVWDLVFEKK 238


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 588,148
Number of extensions: 24685
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 158
Effective length of database: 921,564
Effective search space: 145607112
Effective search space used: 145607112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)