BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0484.p (615 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980056|ref|YP_001354619.1| ATP-dependent DNA helicase [Jan... 1010 0.0 gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Jan... 61 2e-10 gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Jan... 60 4e-10 >gi|152980056|ref|YP_001354619.1| ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 607 Score = 1010 bits (2612), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/598 (80%), Positives = 539/598 (90%), Gaps = 1/598 (0%) Query: 16 RALHVLETVFGYSSFRGHQGEIVQHVAAGGDALVLMPTGGGKSLCYQVPALLREGTGVVV 75 +ALH+LETVFGYSSFRG Q EIV VA GGDALVLMPTGGGKSLCYQ+PALLR+G GVV+ Sbjct: 9 QALHILETVFGYSSFRGEQAEIVDVVARGGDALVLMPTGGGKSLCYQIPALLRDGVGVVI 68 Query: 76 SPLIALMQDQVDALAEVGVRAAFLNSTQSFDEALQIERRLRQGDLDVLYVAPERLMTPRC 135 SPLIALMQDQVDALAEVGVRAAFLNSTQSF+E+++IERRLR GDLD+LYVAPERLMTPRC Sbjct: 69 SPLIALMQDQVDALAEVGVRAAFLNSTQSFEESVRIERRLRSGDLDLLYVAPERLMTPRC 128 Query: 136 LDLLESARIALFAIDEAHCVSQWGHDFRPEYIKLSILHERFPQVPRIALTATADQQTREE 195 LD+LE+ +IALFAIDEAHCVSQWGHDFRPEYI+LS+LHERFPQVPRIALTATAD QTR E Sbjct: 129 LDMLETTKIALFAIDEAHCVSQWGHDFRPEYIRLSVLHERFPQVPRIALTATADHQTRAE 188 Query: 196 IIHRLQLEDARQFVSSFDRPNIRYQIVEKANGRKQLLDFIKSEHPEDAGIVYCLSRKKVE 255 I HRLQL+DAR FVSSFDRPNIRYQIVEKANGRKQ+LDFI+SEHP DAGIVYCLSRKKVE Sbjct: 189 IAHRLQLDDARMFVSSFDRPNIRYQIVEKANGRKQVLDFIESEHPGDAGIVYCLSRKKVE 248 Query: 256 ETAEFLRGEGINALAYHAGMDYALRTKNQARFLREDKIVMVATIAFGMGIDKPDVRFVCH 315 ETAEFL GI AL YHAGM++A R+KNQARFLRE+ IVMVATIAFGMGIDKPDVRFV H Sbjct: 249 ETAEFLNENGITALPYHAGMEFATRSKNQARFLREESIVMVATIAFGMGIDKPDVRFVAH 308 Query: 316 LDLPKSVEGYYQETGRAGRDGLPADAWMAYGLQDVVQQRRMIDESEADETFKRVLGTKLD 375 LDLPKS+EGYYQETGRAGRDG A+AWMAYGLQDVVQQRRMIDESEADETFKRV KLD Sbjct: 309 LDLPKSIEGYYQETGRAGRDGGAANAWMAYGLQDVVQQRRMIDESEADETFKRVQSVKLD 368 Query: 376 AMLSLCETLHCRRVHLLDYFGEKSSPCGNCDTCLTPPVSFDATVEVQKLLSTVYRVEQRF 435 AML LCETL+CRR LLDYFG+ S+PCGNCDTCL PP SFDATVEVQKLLST+YRV QRF Sbjct: 369 AMLGLCETLYCRRARLLDYFGQASTPCGNCDTCLNPPRSFDATVEVQKLLSTIYRVGQRF 428 Query: 436 APGHVIEVLRGIDGERVKQWRHDQLSVFGVGSDRGEAEWRAILRQVIALGLLTVDAENYS 495 HV++VLRG+D +++KQW+H+++S FG+GSDR EAEWRAILRQ IALGL++VD E+Y Sbjct: 429 GAMHVLDVLRGVDSDKIKQWQHEEVSTFGIGSDRSEAEWRAILRQSIALGLVSVDHESYG 488 Query: 496 ALKLTEAARPVLRGEQQVQLRRYR-KPEKAKRSSQRSSFVETDLNSEEQALFEKLRWWRM 554 ALKLTEAARPVL+G ++VQLR Y+ + + SS+ FVETDL++ EQA+FEKLRWWRM Sbjct: 489 ALKLTEAARPVLKGGEKVQLREYQKPLKSKRSSSKPKGFVETDLSTAEQAVFEKLRWWRM 548 Query: 555 ETARAHNVPAYVIFHDATMREIAKARPQSLDELRHVTGVGEKKLETYGAQIIELIAQM 612 ETAR HNVPAYVIFHDATMREIAKA+P SLD+LR V+GVGEKKLETYGA I+ LIA+M Sbjct: 549 ETARKHNVPAYVIFHDATMREIAKAQPASLDDLRGVSGVGEKKLETYGADIVALIAEM 606 >gi|152981028|ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 145/360 (40%), Gaps = 54/360 (15%) Query: 23 TVFGYSSFRGHQGEIVQHVAAGGDALVLMPTGGGKSLCYQVPALLR---EG----TGVVV 75 T GY++ G Q + + G D +V TG GK+ + +PAL + EG TG Sbjct: 17 TESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPALHKFASEGDQPQTGKTP 76 Query: 76 S------------PLIALMQDQVDALAEVGVRAAFLNSTQSFDEALQIERRLRQ------ 117 + P Q ++ L R L T S D+ +R++ Sbjct: 77 NQEAQSARSRGDRPRFKPAQPKMLVLTPT--RELALQVTTSTDKYGAFMKRVKAVSILGG 134 Query: 118 ----GDLDVLYVAPERLM-TP-RCLDLLESARI-----ALFAIDEAHCVSQWGHDFRPEY 166 + +L PE L+ TP R +D +ES +I + +DEA + G E Sbjct: 135 MPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEADRMLDMGFIDDIEK 194 Query: 167 IKLSILHER----FPQVPRIALTATADQQTREEIIHRLQLEDARQFVSSFDRPNIR--YQ 220 I + R F + A + T++ +I +Q+ S+ NI+ Sbjct: 195 IVAATPEGRQTMLFSATLDGMVGNMAKRITKDALI--IQIAG-----SATKHENIKQCVH 247 Query: 221 IVEKANGRKQLLDFIKSEHPEDAGIVYCLSRKKVEETAEFLRGEGINALAYHAGMDYALR 280 V+ + + ++LD + + D +V+ +++ + A+ L G A A H M R Sbjct: 248 FVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHGDMHQGAR 307 Query: 281 TKNQARFLREDKIVMVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQ---ETGRAGRDGL 337 + R V+VAT GID P + V + DLPK E Y TGRAGR+G+ Sbjct: 308 NRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTGRAGRNGI 367 >gi|152981148|ref|YP_001352987.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 448 Score = 60.1 bits (144), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 136/347 (39%), Gaps = 43/347 (12%) Query: 23 TVFGYSSFRGHQGEIVQHVAAGGDALVLMPTGGGKSLCYQVPALLREGT-------GVVV 75 T GY++ Q + + V AGGD L TG GK+ + +P L R T Sbjct: 17 TESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPILHRLATSGTPHASASAQ 76 Query: 76 SPLIALMQDQVDALA---EVGVRA----AFLNSTQSFDE-ALQIERRLRQGDLDVLYVAP 127 P+ AL+ LA E VR LNS F + + ++ + +D+L P Sbjct: 77 RPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINPQIKMLKHGVDILVATP 136 Query: 128 ERLMTPRCLDLLESARIALFAIDEAHCVSQWG--HDFR------PEYIKLSILHERFPQV 179 RL+ + I + +DEA + G D R P+ + + F Sbjct: 137 GRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAALPKNRQNLLFSATFSNE 196 Query: 180 PRIALTATADQQTREEIIHRLQ-LEDARQFVSSFDR----PNIRYQIVEKANGRKQLLDF 234 + + E+ R +E Q + DR P + + I K+N Q+L F Sbjct: 197 IKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLAHLI--KSNNWSQVLVF 254 Query: 235 IKSEHPEDAGIVYCLSRKKVEETAEFLRGEGINALAYHAGMDYALRTKNQARFLREDKIV 294 +++H + K VE+ L +GI+ +A H + RT+ + F V Sbjct: 255 TRTKHGAN---------KLVEQ----LEKDGISGMAIHGNKSQSARTRALSEFKDGSLQV 301 Query: 295 MVATIAFGMGIDKPDVRFVCHLDLPKSVEGYYQETGRAGRDGLPADA 341 +VAT GID + V + DLP E Y GR GR G +A Sbjct: 302 LVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEA 348 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,431,374 Number of extensions: 60887 Number of successful extensions: 173 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 4 Length of query: 615 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 526 Effective length of database: 891,988 Effective search space: 469185688 Effective search space used: 469185688 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)