BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0483.p
         (290 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979814|ref|YP_001354620.1| undecaprenol kinase [Janthinoba...   115   2e-27

>gi|152979814|ref|YP_001354620.1| undecaprenol kinase
           [Janthinobacterium sp. Marseille]
          Length = 277

 Score =  115 bits (289), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/275 (33%), Positives = 138/275 (50%), Gaps = 22/275 (8%)

Query: 24  LGIVQGITELLPISSTAHMRVVPAFLGWHDPG-SAFSAAMQLAALAAVISYFRRDVTAVT 82
           +GIV+G TE LPISST H+ +  + L +  P    F  A+Q  A+ AV+  +R  + AV 
Sbjct: 12  MGIVEGFTEFLPISSTGHLILAGSLLDFTGPKVKVFEIAIQTGAMLAVVWEYRAKIAAVL 71

Query: 83  GGSLAAWRRRDFSDPMFKLAVAIILATIPIGIAGLAL-SHVLNACGSPLR---SLSVIGW 138
           GG L   + +       K A+ II+A +P  + GL   S +     +P+    +  V G+
Sbjct: 72  GGLLTERKAQ-------KFALNIIIAFLPAALLGLVFASKIKEKLFAPVPVAIAFIVGGF 124

Query: 139 SCIVMAGLLALSELVCRHRRSVDQMRLRDAFIVGLAQVGALIPGVSRSGSTLTAALFLNF 198
             + +      ++ V R   +VD M + DA  VG AQ  ALIPG SRSG+++   +F   
Sbjct: 125 IILWIEKRNRNTDFVAR-VETVDDMTMLDALKVGCAQAFALIPGTSRSGASIIGGMFFGL 183

Query: 199 RREEAARFSFLLGLP----AIALAGLKELAVLLHAHIPLQAWGVLLFGLAVASVSAFAAI 254
            R+ A  FSF L +P    A   +  K+ A+L  A IPL   G    G A A VSAF  +
Sbjct: 184 SRKAATEFSFFLAIPTLMGATVYSVYKDRALLSMADIPLFGLG----GFA-AFVSAFLCV 238

Query: 255 WGLMKFLERFSTWPFIVYRAALGVFLLLGVSRGWL 289
             L++++       F  YR   G+F+LL    GW+
Sbjct: 239 RWLLRYISTHDFTFFAYYRIVFGLFVLLSAYYGWV 273


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 614,943
Number of extensions: 22449
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 208
Effective length of database: 917,867
Effective search space: 190916336
Effective search space used: 190916336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)