BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0478.p
         (221 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981335|ref|YP_001354622.1| protein-L-isoaspartate(D-aspart...   290   5e-80
gi|152980875|ref|YP_001353826.1| protein-L-isoaspartate(D-aspart...    77   9e-16

>gi|152981335|ref|YP_001354622.1|
           protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 216

 Score =  290 bits (742), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 153/221 (69%), Positives = 179/221 (80%), Gaps = 5/221 (2%)

Query: 1   MNIEQARFNMIEQQIRPWNVLAQDVLDLLMVVKREEFVPAAYRSLAFFDTEIPLPGGENM 60
           MNIE+ARFNMIEQQIRPW+VL  DVL+LL+VVKRE FVP AYR+LAF D+EIPLP GE+M
Sbjct: 1   MNIEKARFNMIEQQIRPWDVLDLDVLELLVVVKREAFVPLAYRALAFADSEIPLPHGESM 60

Query: 61  LAPKIEARILQEANVKKHEYVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAAQNLS 120
           + PK+EARI+QE  VKKHE VLEIGAGSGYMAALLAHKARHVTTVEI PELKALA +NL+
Sbjct: 61  MTPKLEARIMQELAVKKHENVLEIGAGSGYMAALLAHKARHVTTVEIEPELKALAEKNLA 120

Query: 121 DYGVANVDVQLGNGAQGWNGADGKPAEYDVIVISGSLPVLPDAFGKQLKIGGRLLAIVGS 180
           DYGV+N  V+LG+G QGW  A+     YDVIV+SGS+P +P+A    LK+GGRLLA+VG+
Sbjct: 121 DYGVSNATVELGDGVQGWGDAN-----YDVIVVSGSVPSVPEALLANLKVGGRLLAVVGA 175

Query: 181 APVMELQLITRTSEHVFETVNIVETLAKPLHAALTPSHFTF 221
           AP M  Q+ITRTS+  F TV + ETL KPL  A  PS F F
Sbjct: 176 APAMTAQIITRTSDVAFSTVGLFETLLKPLRNAPVPSQFKF 216


>gi|152980875|ref|YP_001353826.1|
           protein-L-isoaspartate(D-aspartate) O-methyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 292

 Score = 77.0 bits (188), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 9/192 (4%)

Query: 24  DVLDLLMVVKREEFVPAAYRSLAFFDTEIPLPGGENMLAPKIEARILQEANVKKH----E 79
            VL  +  V R  F+  A  S A+ D  +P+   + +  P I AR+++     +      
Sbjct: 101 KVLAAMDAVPRHLFMEPALASQAYIDASLPIGYHQTISQPYIVARMIEVMRNNQQGGVLN 160

Query: 80  YVLEIGAGSGYMAALLAHKARHVTTVEISPELKALAAQNLSDYGVANVDVQLGNGAQGWN 139
            VLEIG G GY AA+L+  A+ V ++E    L  LA  NL    VAN+ +  G+G  G  
Sbjct: 161 RVLEIGTGCGYQAAVLSLVAKEVYSIERIKGLHELAKANLRPMRVANIRLHYGDGMLGLP 220

Query: 140 GADGKPAEYDVIVISGSLPVLPDAFGKQLKIGGRLLAIVGSAPVMELQLITRTSEHVFET 199
            A    A +D I+++ +   +P A  +Q+ IGGRL+A VG    + LQLI R S+  +++
Sbjct: 221 QA----APFDGIILAAAGLEVPQALLEQMTIGGRLVAPVGERHQV-LQLIERVSKFEWKS 275

Query: 200 VNIVETLAKPLH 211
             + +    PL 
Sbjct: 276 STLEDCHFVPLR 287


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 537,421
Number of extensions: 23202
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 141
Effective length of database: 925,261
Effective search space: 130461801
Effective search space used: 130461801
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)