BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0476.p
         (214 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982014|ref|YP_001354625.1| TetR/AcrR family transcriptiona...   258   3e-70
gi|152982094|ref|YP_001352801.1| TetR family transcriptional reg...    56   2e-09

>gi|152982014|ref|YP_001354625.1| TetR/AcrR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 213

 Score =  258 bits (658), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 128/210 (60%), Positives = 155/210 (73%)

Query: 1   MARSTKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60
           MARSTKEEALETR RILDAAE+VF  RG++Q+SLADVA AA+VTRGAIYWHFKNKSDLF+
Sbjct: 1   MARSTKEEALETRNRILDAAEEVFFTRGLAQSSLADVAVAADVTRGAIYWHFKNKSDLFE 60

Query: 61  AMCERVRLPMEAVLEENASPQLEDPLGQFLRSGIYVLTMAATDERCRRVFDIIFNKCEFA 120
           AMCERVRLPME ++       + DPLG    + I++L     + R RRV DIIF KCE  
Sbjct: 61  AMCERVRLPMETMMTTPGEKFVRDPLGHLRHTWIWLLRDVVDNPRSRRVLDIIFLKCELV 120

Query: 121 DAHDPILIRQRECHVDGLLRLEQILMNAVARGQLPATLDIRLACLAAHATFSGLLTDWFF 180
           D +DPI +RQRECH +GL  +  IL  AVA GQLPA LD +LA L+ H++  GLLTDW F
Sbjct: 121 DHNDPIWVRQRECHREGLENMRSILEEAVAMGQLPADLDTQLAVLSLHSSLVGLLTDWLF 180

Query: 181 SPDSFDLVKDGERILAASLYALKTAPSLQK 210
           SPDSFDL +  E ++ A L  L+ APSL++
Sbjct: 181 SPDSFDLKEVVEPLVDACLDGLRNAPSLRR 210


>gi|152982094|ref|YP_001352801.1| TetR family transcriptional
          regulator [Janthinobacterium sp. Marseille]
          Length = 187

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 37/65 (56%)

Query: 5  TKEEALETRARILDAAEQVFHQRGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFDAMCE 64
          +KE+  E R  +LDAA  +F +RG    ++A++ KAA +T GA Y HF +K DL    C 
Sbjct: 4  SKEQVAENRQAVLDAAATLFRERGFEGVTVAEIMKAAGLTHGAFYGHFASKDDLITQTCT 63

Query: 65 RVRLP 69
              P
Sbjct: 64 HALAP 68


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 450,863
Number of extensions: 17165
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 135
Effective length of database: 928,958
Effective search space: 125409330
Effective search space used: 125409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)