BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0475.p (402 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprote... 468 e-133 gi|152980288|ref|YP_001353254.1| multidrug efflux system transme... 182 4e-47 gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [... 150 2e-37 gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthi... 112 3e-26 gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthi... 103 2e-23 >gi|152981741|ref|YP_001354626.1| acriflavin resistance lipoprotein A precursor [Janthinobacterium sp. Marseille] Length = 422 Score = 468 bits (1203), Expect = e-133, Method: Compositional matrix adjust. Identities = 237/377 (62%), Positives = 292/377 (77%), Gaps = 1/377 (0%) Query: 1 MSSVSRFTRLTMTVAVAAALVACGQKPAAQGGPMPAPEVSVVTIAPQRVAITNELPGRVE 60 MSS+ R TRL+ + + A+ CG K P P EVSVVT+ P + +TNELPGR+E Sbjct: 1 MSSLPRLTRLSAALFLIYAIAGCGAKSDQAAAP-PPQEVSVVTVQPGVLGVTNELPGRME 59 Query: 61 AFRTAQVRARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKASLESAQATLARAQANLTQ 120 + R A+VRARV GIV KRVF+EGS+VK G +L++IDPAQ +A+ SA A +AR +A L Sbjct: 60 SIRVAEVRARVPGIVLKRVFREGSDVKAGTLLYQIDPAQLQATYNSADAAVARGEATLAT 119 Query: 121 TTLTAQRYKPLVEVNAVSKMDYDNAVAAQKQAEADVASGKAAVQTASLNLGYATVTSPIS 180 A+RYKPLVE NAVSK +YD+ AA+KQA AD+AS KAA + A L+LGYA+VTSPIS Sbjct: 120 AEQKAKRYKPLVETNAVSKQEYDDVAAAEKQAIADLASAKAARENARLSLGYASVTSPIS 179 Query: 181 GRIGRALVTEGALVGQGDATQLALVQQLDPVYVNVTQSSADLLKLQQAMAAGQLKNVGDN 240 GRIGRALVTEGALVGQGD T LA+VQQ+DP+YVN+TQS+ ++LKL++AM G+LK+ G Sbjct: 180 GRIGRALVTEGALVGQGDVTPLAIVQQIDPIYVNMTQSANEVLKLKRAMDEGKLKSAGKG 239 Query: 241 KAKVTLVLENGQPYDQPGKLLFSDVSVDESTGSVSLRAEFPNPKRLLLPGTYVRTNIEQA 300 AKVTLV ++GQ Y + GKLLFSD++VDES+GSV+LRAE PNP LLLPG YVR IEQA Sbjct: 240 AAKVTLVTDDGQEYGRAGKLLFSDLTVDESSGSVTLRAEIPNPDGLLLPGMYVRARIEQA 299 Query: 301 VDDQALLVPQQAVMRDAGGSIVMVVNAENKVEPRPVKTGGARGNNWQVLDGLKEGDRVIV 360 VD+ A+ VPQQAV+R GGS VMVV A+ KV RPV+TG + G W + DGLKEGD+VIV Sbjct: 300 VDENAITVPQQAVLRTPGGSAVMVVGADGKVASRPVQTGSSSGTAWIITDGLKEGDQVIV 359 Query: 361 EGLQKVRPGATVKPVQW 377 EGLQKV+PGATVKPVQW Sbjct: 360 EGLQKVQPGATVKPVQW 376 >gi|152980288|ref|YP_001353254.1| multidrug efflux system transmembrane protein [Janthinobacterium sp. Marseille] Length = 408 Score = 182 bits (461), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 133/381 (34%), Positives = 198/381 (51%), Gaps = 11/381 (2%) Query: 2 SSVSRFTRLTMTVAVAAALVA-------CGQKPAAQGGPMPAPEVSVVTIAPQRVAITNE 54 S+ RF+R + +AV L+ G+ Q A V+V ++ + V ++ Sbjct: 4 STTPRFSRSAIAIAVGVLLIVGAATVSLTGRAEKTQAAAPAAVSVTVASVLERSVTEWDD 63 Query: 55 LPGRVEAFRTAQVRARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKASLESAQATLARA 114 GRVEA ++R R++G + F++G VK+G +LF IDP YKA L A+A A A Sbjct: 64 FSGRVEAVERVEIRPRISGTIDAVHFQDGQLVKKGALLFTIDPRPYKAELARAEAARAGA 123 Query: 115 QANLTQTTLTAQRYKPLVEVNAVSKMDYDNAVAAQKQAEADVASGKAAVQTASLNLGYAT 174 QA L +R K L+E AV++ + D A ++A+A++ + AAV TA LNL Y Sbjct: 124 QARLALAKTELERTKRLLEERAVAQRELDTRENAMQEADANLKATDAAVLTARLNLQYTE 183 Query: 175 VTSPISGRIGRALVTEGALVGQG-DATQLALVQQLDPVYVNVTQSSADLLKLQQAMAAGQ 233 +T+P+SGR+ RA +T G LV G A L V + PVYVN ++ G Sbjct: 184 ITAPVSGRVSRAEITVGNLVATGPTAPTLTTVVSVSPVYVNFEIDEPTYIRYA---GNGT 240 Query: 234 LKNVGDNKAKVTLVLENGQPYDQPGKLLFSDVSVDESTGSVSLRAEFPNPKRLLLPGTYV 293 + N G +K V++ L + + Y + G + D +D +G++ +RA F N L PG Y Sbjct: 241 VGNSGVSKIPVSIGLTSEEGYPRTGNVKSFDNRLDTGSGTIRVRAVFNNEDGTLTPGMYA 300 Query: 294 RTNIEQAVDDQALLVPQQAVMRDAGGSIVMVVNAENKVEPRPVKTGGARGNNWQVLDGLK 353 R A ALL+ +AV D VMVV+A+NKV RPV G V GL+ Sbjct: 301 RVRTGDANAKNALLIDDKAVGTDQDKKYVMVVSADNKVTYRPVSLGPIVDGLRIVRSGLQ 360 Query: 354 EGDRVIVEGLQKVRPGATVKP 374 + +R++V GLQ++RP TV P Sbjct: 361 KDERIVVNGLQRIRPNDTVTP 381 >gi|152981697|ref|YP_001353374.1| HlyD family secretion protein [Janthinobacterium sp. Marseille] Length = 457 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/354 (31%), Positives = 181/354 (51%), Gaps = 18/354 (5%) Query: 39 VSVVTIAPQRVAITNELPGRVEAFRTAQVRARVAGIVQKRVFKEGSEVKEGQVLFKIDPA 98 VSV Q + +T G + A TA VR +V+G++Q+ FKEG +V+ GQ+L +IDP Sbjct: 71 VSVQEARRQDIRVTVNAIGSINAANTAVVRVQVSGVLQQINFKEGQQVQAGQLLAQIDPR 130 Query: 99 QYKASLESAQATLARAQANLTQTTLTAQRYKPLVEVNAVSKMDYDNAVAAQKQAEADVAS 158 ++A+L A+ LAR +A L + RYK L+ +A+ K D A +Q E V S Sbjct: 131 AFQATLGQAEGVLARDKAQLDNARIDLARYKDLLSKDAIPKQQLDTQEALVRQLEGTVKS 190 Query: 159 GKAAVQTASLNLGYATVTSPISGRIGRALVTEGALVGQGDATQLALVQQLDPVYVNVTQS 218 + V +A L L Y VT+PI+GR+G G +V D + ++ Q P+ + + Sbjct: 191 DQGTVDSAKLQLSYTRVTAPIAGRVGLKQSDLGNVVQPADTNGVVIITQTRPIALVFSVP 250 Query: 219 SADLLKLQQAMAAGQLKNV--GDNKAKVTLVLENGQPYDQPGKLLFSDVSVDESTGSVSL 276 SA++ + + A + V D K L G++ D ++D +T ++ + Sbjct: 251 SANVPAITARLRANETVAVEAWDRTGKTKLAT---------GQVATVDNAIDVTTDTIKV 301 Query: 277 RAEFPNPKRLLLPGTYVRTNIEQAVDDQALLVPQQAVMRDAGGSIVMVVNAENKVEPRPV 336 +A FPN L P V ++ + L VPQ AV+R + G V VVNA++ V R V Sbjct: 302 KALFPNLDDALFPNQAVSVVMQLNLLKDVLTVPQAAVLRGSQGFYVYVVNADSTVSTRVV 361 Query: 337 KTGGARGNNWQVLDG-LKEGDRVIVEGLQKVRPGATVK-----PVQWSPAGAPA 384 K GA + W ++ L+ G++V+++G ++R G V+ P Q + A AP+ Sbjct: 362 KP-GAIDSGWMAIEAKLEAGEKVVIDGTDRLREGGKVEVIAADPKQRAGASAPS 414 >gi|152981804|ref|YP_001354023.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 377 Score = 112 bits (281), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 107/345 (31%), Positives = 165/345 (47%), Gaps = 13/345 (3%) Query: 44 IAPQR-VAITNELPGRVEAFRTAQVRARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKA 102 IA Q+ + IT G V A T VR +V IV+ KEG VK GQ+LF +D ++ Sbjct: 45 IATQKTIPITVNANGYVTAVSTVDVRPKVQNIVRTIHVKEGQFVKAGQLLFTLDERSDQS 104 Query: 103 SLESAQATLARAQANLTQTTLTAQRYKPLVEVNAVSKMDYDNAVAAQKQAEADVASGKAA 162 ++ A A LA AQA L +R + L+ N VS+ D A + +AA Sbjct: 105 NVAKASAELAAAQAELADAEQILKRNQDLLAKNFVSQAVVDTARNKVDALRNTTRANQAA 164 Query: 163 VQTASLNLGYATVTSPISGRIGRALVTEGALVGQGDATQLALVQQLDPVYVNVTQSSADL 222 +Q++S+ L + + ISGRIG V G+L Q T + + Q+DP+ ++ T +L Sbjct: 165 IQSSSVALSDNQIKAGISGRIGVINVHPGSL-AQPTGTVMVTIVQIDPIMISFTLPEREL 223 Query: 223 LKLQQAMAAGQLKNVGDNKAKVTLVLENGQPYDQPGKLLFSDVSVDESTGSVSLRAEFPN 282 ++ G A V L + GKL F D D +G++ ++AEF N Sbjct: 224 ANIRATYPQGN--------APVHAQLPGQEVLT--GKLTFIDNLADTQSGTIRMKAEFAN 273 Query: 283 PKRLLLPGTYVRTNIEQAVDDQALLVPQQAVMRDAGGSIVMVVNAENKVEPRPVKTGGAR 342 ++ L PG+Y+ ++ A+LVP QAV+ +V VV ++ V+ + Sbjct: 274 AEQKLWPGSYINVSMVSREVPDAVLVPAQAVVTGPVDKLVYVVQPDDTVKEEKISVLAIE 333 Query: 343 GNNWQVLDGLKEGDRVIVEGLQKVRPGATVKPVQWSPAGAPAAAT 387 G V G+K G RV+VEG + +RPG ++ V+ P A T Sbjct: 334 GGQAAV-SGVKAGSRVVVEGTKNLRPGTKIREVKKEVPATPVAPT 377 >gi|152981819|ref|YP_001351711.1| membrane fusion protein [Janthinobacterium sp. Marseille] Length = 416 Score = 103 bits (257), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 105/355 (29%), Positives = 163/355 (45%), Gaps = 23/355 (6%) Query: 45 APQRVAITN--ELPGRVEAFRTAQVRARVAGIVQKRVFKEGSEVKEGQVLFKIDPAQYKA 102 +P+ A N LPG ++ A + AR G V + V G VK G +L ID + Sbjct: 77 SPRSSATDNVLRLPGTLQGIIEAPINARTNGYVTRWVKDIGDPVKRGDLLAVIDTPEVAQ 136 Query: 103 SLESAQATLARAQANLTQTTLTAQRYKPLVEVNAVSKMDYDNAVAAQKQAEADVASGKAA 162 L A+AT A+A NL T +R+ L + +AVS+ D D A A A S KA Sbjct: 137 QLNEAKATQAQATTNLQLAKSTFERWDALRKRDAVSQQDLDEKRNALAVAVAADNSSKAT 196 Query: 163 VQTASLNLGYATVTSPISGRIGRALVTEGALVGQGDATQ-LALVQQLDP--VYVNVTQSS 219 VQ LGY+ + +P G + R + G LV G +T+ L + + DP VYV V QS Sbjct: 197 VQRLQDQLGYSRIVAPFDGIVTRRNIDIGTLVDSGGSTRVLFTLAKSDPLRVYVYVPQSY 256 Query: 220 ADLLKLQQAMAAGQLKNVGDNKAKVTLVLENGQPYDQPGKLLFSDVSVDESTGSVSLRAE 279 + +K AG N +TL G+ +D GK+ + ++D T ++ + + Sbjct: 257 STQIK------AG-------NTVGITLNEIPGKVFD--GKIARTAGAIDTVTRTLQVAID 301 Query: 280 FPNPKRLLLPGTYVRTNIEQAVDD-QALLVPQQAVMRDAGGSIVMVVNAENKVEPRPVKT 338 PNP +LLPG Y + I+ + +L +P ++ G V VV + KV +PV Sbjct: 302 LPNPDGVLLPGAYAQVAIKASGGSASSLTIPNNTLLFRPEGPRVAVVGDDGKVRLQPVVI 361 Query: 339 GGARGNNWQVLDGLKEGDRVIVEGLQKVRPGATVKPVQ--WSPAGAPAAATGQAA 391 G + ++ G+ D++I+ + G V + A PA G+A+ Sbjct: 362 ARELGVDIELASGVTAQDKLIINPADSLSNGDAVSVITPPADKAATPATNKGKAS 416 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.312 0.127 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 780,510 Number of extensions: 29828 Number of successful extensions: 134 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 117 Number of HSP's successfully gapped: 15 Length of query: 402 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 317 Effective length of database: 906,776 Effective search space: 287447992 Effective search space used: 287447992 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)