BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0473.p (483 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthi... 564 e-162 gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthin... 415 e-117 gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-li... 218 7e-58 gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux prot... 212 4e-56 gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [... 200 2e-52 >gi|152981001|ref|YP_001354628.1| drug efflux lipoprotein [Janthinobacterium sp. Marseille] Length = 481 Score = 564 bits (1454), Expect = e-162, Method: Compositional matrix adjust. Identities = 291/461 (63%), Positives = 355/461 (77%), Gaps = 1/461 (0%) Query: 15 LCAALMVAGVLGGCSLAPTYERPQAPVESAYPADA-AGRAELQAVNLGWRQFFPDQRLQQ 73 + AL+ AGVL CS+AP Y RP APV + Y + A +++AV++GWR FF D RLQ Sbjct: 4 ITLALLAAGVLSACSMAPKYVRPDAPVAADYGVPSKADNNQVRAVDIGWRNFFTDPRLQV 63 Query: 74 LIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAARTRTPASQSLTGQPVI 133 LI A+ NNRDLR A L IEEARA Y I ADLLP LN+ + +R R PAS S TG V+ Sbjct: 64 LIGNAIANNRDLRVAALRIEEARALYNIQSADLLPTLNVNATGSRARVPASISNTGSSVV 123 Query: 134 SNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAYLSERSY 193 S++YQVGL + A+ELDFFGRVR+L DAALA+YLSTEEAQ++AQISLV++VA+AYLSERS+ Sbjct: 124 SSNYQVGLGLAAFELDFFGRVRSLSDAALAAYLSTEEAQRAAQISLVSEVAKAYLSERSF 183 Query: 194 AEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQTLVESARVAKAQLERQRAQAE 253 AEQ LA T +SR + +L+++RF+VGASSALD R + L+++AR A+ +RQRAQA Sbjct: 184 AEQQDLARQTYESRVEAYKLSKQRFEVGASSALDLRNDEALLQTARAAELLAQRQRAQAM 243 Query: 254 NALTLLVGKKVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLLAANANIGA 313 NALTLLVG+ + DLPPAQ LS + I+TDIPAGLPSDLLT RPDIRSAEQ+LL+ANANIGA Sbjct: 244 NALTLLVGQPLTDLPPAQALSSQTILTDIPAGLPSDLLTQRPDIRSAEQTLLSANANIGA 303 Query: 314 ARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGPSLSLPIFDFGRNSANLDLAEVRK 373 ARAAFFPRISLT G++S+ L LFE GS +WSF P L LPIFD GRN NL+LAEVRK Sbjct: 304 ARAAFFPRISLTAGLGTSSNELAGLFEGGSRSWSFAPQLVLPIFDAGRNRGNLNLAEVRK 363 Query: 374 NQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTDLRFKNGIASS 433 + AV YEK+IQ AFREV+DALVAR LD QV+AQ AQ ER K RF+NGIASS Sbjct: 364 DIAVANYEKSIQVAFREVSDALVARDLLDQQVEAQRLVQEAQAERFKFATQRFQNGIASS 423 Query: 434 LDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGGINE 474 LD LDAQR+LF+AQ +L+Q R RL NA+DLY++LGGG+ E Sbjct: 424 LDVLDAQRELFTAQLSLVQVRLTRLTNAVDLYRSLGGGLVE 464 >gi|152983076|ref|YP_001352716.1| outer membrane protein [Janthinobacterium sp. Marseille] Length = 476 Score = 415 bits (1067), Expect = e-117, Method: Compositional matrix adjust. Identities = 224/466 (48%), Positives = 310/466 (66%), Gaps = 6/466 (1%) Query: 12 LLQLCAALMVAGVLGGCSLAPTYERPQAPVESAYP----ADAAGRAELQAVNLGWRQFFP 67 ++QL A +++ +L GCSLAP YERP PV +P A+ ++ A + W++FF Sbjct: 9 VVQLSYATVLSSILVGCSLAPVYERPDLPVSKTWPDQRLANERNSPDVTASEIDWKEFFI 68 Query: 68 DQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAARTRTPASQSL 127 DQ L Q+I AL NNRDLR A LNI+ ARA Y + AD LP++ + S AR RTPA + Sbjct: 69 DQNLSQVIQIALNNNRDLRVAALNIDRARALYGVQGADRLPSVGVGTSGARQRTPADLND 128 Query: 128 TGQPVISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVAQVAQAY 187 G ++++Y G+ + ++ELDFFGR++NL AAL Y++T+EA++SAQI+L+++VA Y Sbjct: 129 KGFSDVTSTYSAGIGITSFELDFFGRIKNLSQAALERYIATDEARRSAQIALISEVAMRY 188 Query: 188 LSERSYAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQTLVESARVAKAQLER 247 + + QLAN+TL +R D+ + + GASS LD R +++L+E+ARVA AQ R Sbjct: 189 QALAADHRLWQLANNTLSTRLDSHARQQSLLEQGASSELDLRQSESLLEAARVALAQQTR 248 Query: 248 QRAQAENALTLLVGKKVGD--LPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAEQSLL 305 QRA +NAL LLVG + LP + ++ DIP GLPSDL++ RPDIR E L Sbjct: 249 QRAVDQNALRLLVGATIDPSLLPSGMSDALPAMLADIPVGLPSDLISTRPDIRQHEAILR 308 Query: 306 AANANIGAARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGPSLSLPIFDFGRNSAN 365 + NA+IGAARAAFFPRISLTG+ G++SS L LFE+GS +WSF P +SLPIFD GRN AN Sbjct: 309 SENASIGAARAAFFPRISLTGSLGTSSSELSGLFEAGSRSWSFLPQVSLPIFDVGRNRAN 368 Query: 366 LDLAEVRKNQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKLTDLR 425 L++A+ ++ A+ YEK+IQ AFREVADAL TL ++++A A A++ R L+ R Sbjct: 369 LNVAKADRDIAIAEYEKSIQIAFREVADALAGTDTLKEELRASTAQERAERVRYVLSKQR 428 Query: 426 FKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGG 471 +++G AS L+ LDAQR LF+ QQ I + N I LYKALGGG Sbjct: 429 YESGYASYLEFLDAQRSLFAIQQKTIVTELAEMQNKIGLYKALGGG 474 >gi|152981317|ref|YP_001351712.1| outer membrane protein, tolC-like [Janthinobacterium sp. Marseille] Length = 475 Score = 218 bits (555), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 160/485 (32%), Positives = 254/485 (52%), Gaps = 24/485 (4%) Query: 4 LSLPRSPRLLQLCAALMVAGVLGGCSLAPTYERPQAPVESAYPADAAGRA------ELQA 57 + L R+P L A L +LGGC++ P Y+RP APV A+ +A +A EL+ Sbjct: 1 MILRRTPAFASLLALL----ILGGCAVGPDYQRPDAPVAQAWKTEAGWQASNPRDGELKG 56 Query: 58 VNLGWRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAA 117 W + F D L L AL+N + + A +++ARAQ +A + P + +A Sbjct: 57 ---AWWEIFRDAELNALQEQALKNGQTMVIAQARVDQARAQANVANSSFFPKIGAQAGSA 113 Query: 118 RTRTPASQSLTG-----QPVISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQ 172 R RT A + LT V+ N + V +YELD FGRVR + A A+ + Sbjct: 114 RNRTSAERPLTNYNSQNSSVVQNDFNAAFTV-SYELDLFGRVRRQAEGAGATAQQAQADF 172 Query: 173 KSAQISLVAQVAQAYLSERSYAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQ 232 ++ ++ L A++A YL R ++ + TL ++ L+ R ++GA+S LD Q Sbjct: 173 ENTRLVLTAELAADYLVLRQTDAEIDVLQQTLGAQTKALDFISARHELGAASGLDLNQQQ 232 Query: 233 TLVESARVAKAQLERQRAQAENALTLLVGKKVGDLPPAQLLSDEKIVTD--IPAGLPSDL 290 L + + L+ QRA+ +NA+ LVG D +L + + T IP P+ L Sbjct: 233 GLTAATQTQLTLLQDQRARYQNAIATLVGVPAPDF---KLPVNLAVTTAPAIPLTAPAAL 289 Query: 291 LTNRPDIRSAEQSLLAANANIGAARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGP 350 L RPDI +AE+++ AANA IG AR+A+FP + L+G +GS ++ L NLF + + WS G Sbjct: 290 LERRPDIAAAERAMAAANAQIGVARSAYFPSLGLSGLYGSDANQLSNLFSAPALLWSIGV 349 Query: 351 SLSLPIFDFGRNSANLDLAEVRKNQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEA 410 S + IFD GR SAN+D A+ QA+ Y +++ A +EV D L + L + + + Sbjct: 350 SATQMIFDGGRTSANVDFAKAGYQQALGNYRQSVLVAMQEVQDGLNSDVALAQALTSAKV 409 Query: 411 FLAAQQERLKLTDLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGG 470 + L L+ R+++GI ++L+ + AQ+ S ++ +Q RL N + L KALGG Sbjct: 410 AADSADRSLGLSTDRYQSGITTNLEVVVAQQTFLSYKRQEVQLHGQRLVNTVKLIKALGG 469 Query: 471 GINEN 475 G + + Sbjct: 470 GWHAH 474 >gi|152980456|ref|YP_001353256.1| outer-membrane drug efflux protein [Janthinobacterium sp. Marseille] Length = 485 Score = 212 bits (540), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 167/485 (34%), Positives = 255/485 (52%), Gaps = 45/485 (9%) Query: 13 LQLCAALMVAG-VLGGCSLA----------PTYERPQAPVES---------AYPADAAGR 52 L + MVA VL GCS A P R Q+ V++ A PAD R Sbjct: 4 FNLALSTMVAALVLAGCSTARPPEELKLDLPNAYREQSTVKANELDGAWKLAAPADNKDR 63 Query: 53 AELQAVNLGWRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNI 112 W + F D++L LI A +N +L A+ +++ARA + AD + + Sbjct: 64 G-------AWWKVFGDEQLSNLIVEAGNSNLNLAIALARVKDARAIAGVVDAD--RGVQV 114 Query: 113 AGSAARTRTPASQSLTGQPVISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQ 172 TR+ +Q + Q Y+ L+ AYE+D FGR+ + AA E A Sbjct: 115 DAGVGPTRSGNAQGASTQ------YRAPLSF-AYEVDLFGRLSDASRAARLDAEGQEAAY 167 Query: 173 KSAQISLVAQVAQAYLSERSYAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQ 232 +S ++L + VAQ Y + RS ++ + T+ R++ L+L ++RFD G +S LD + Sbjct: 168 RSVLLALQSDVAQQYFTIRSLDSEVDVLEKTVALRQEALDLTQRRFDAGDTSELDVAQAK 227 Query: 233 TLVESARVAKAQLERQRAQAENALTLLVGKKVGD--LPPAQLLSDEKIVTDIPAGLPSDL 290 T + ++RQRAQ ++AL +L+GK + LP A L + V +P+GLPSDL Sbjct: 228 TEWATTSAELEGVKRQRAQRDHALAILLGKAPAEFTLPVAPLAA---AVVTVPSGLPSDL 284 Query: 291 LTNRPDIRSAEQSLLAANANIGAARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGP 350 L RPDI A++ L A++A IGAA+AAFFP++ LTG+ G S+ L +LF+ S +W GP Sbjct: 285 LERRPDIAQAQRQLAASSARIGAAKAAFFPKLLLTGSAGYESNELRDLFKWSSRSWMLGP 344 Query: 351 S----LSLPIFDFGRNSANLDLAEVRKNQAVVTYEKTIQTAFREVADALVARGTLDDQVK 406 LS+P+FD GRN +NL A+ V Y + F++V D L A TLD Q++ Sbjct: 345 VVGTILSMPLFDGGRNQSNLARADANYEALVANYRLQVLVGFQDVEDNLSALRTLDRQLQ 404 Query: 407 AQEAFLAAQQERLKLTDLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYK 466 +E + + Q +L D R++ G AS + +DAQR S+Q++ I++ R ++ L + Sbjct: 405 FEEQAVNSAQLASRLADTRYRYGSASYFEVIDAQRSSLSSQRSKIRSTGQRAVASVGLIR 464 Query: 467 ALGGG 471 ALGGG Sbjct: 465 ALGGG 469 >gi|152980931|ref|YP_001355168.1| outer membrane efflux protein [Janthinobacterium sp. Marseille] Length = 473 Score = 200 bits (508), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 239/470 (50%), Gaps = 24/470 (5%) Query: 13 LQLCAALMVAGVLGGCS-----------LAPTYERPQAPVESAYPADAAGRAELQAVNLG 61 +++ A +L GC+ +AP + +PQA V DA G + + Sbjct: 1 MKILTGFSAALLLAGCATQATQQTLVPEVAPQWRQPQANV------DATGTTSV--LTRD 52 Query: 62 WRQFFPDQRLQQLIAAALENNRDLRTAVLNIEEARAQYQIARADLLPNLNIAGSAARTRT 121 W + F L L+ + D+ AV + +A+A IA A LLP LN G+ TR Sbjct: 53 WWRSFGSSELDSLLETVQVQSYDIAAAVARVTQAQATATIAGAALLPELN--GNFGATRN 110 Query: 122 PASQSLTGQPVISNSYQVGLAVPAYELDFFGRVRNLKDAALASYLSTEEAQKSAQISLVA 181 YQ GL+ YELDF+GR R ++D+A A + E + + +++ A Sbjct: 111 GRLGGDGNGTATGTVYQAGLSAT-YELDFWGRNRAVRDSARAGLRAAEFDRDTVHLTVTA 169 Query: 182 QVAQAYLSERSYAEQLQLANDTLKSREDNLELARKRFDVGASSALDFRLTQTLVESARVA 241 VA ++L E++ +A+ ++ S + L++ R GA++ L+ + ++ + A Sbjct: 170 GVASSWLQTVGLRERVAIADLSVASAQRLLDVIESRARAGAANPLELAQQRGVLAAQMRA 229 Query: 242 KAQLERQRAQAENALTLLVGKKVGDLPPAQLLSDEKIVTDIPAGLPSDLLTNRPDIRSAE 301 +A + +Q + L +L+G+ L A ++ + AGLP+DLL RPDI AE Sbjct: 230 RAAIRQQAEDSLTTLAVLLGRNPSLLVLAGTELNKLQAPAVVAGLPADLLVRRPDIARAE 289 Query: 302 QSLLAANANIGAARAAFFPRISLTGNFGSASSTLGNLFESGSGAWSFGPSLSLPIFDFGR 361 L A+ANI AARAA PRISL G+ + S+ + ++F++ +S L+ PIF+ GR Sbjct: 290 AQLSGADANIIAARAAMLPRISLGGDITAGSNRVSSVFDNP--VYSLAAGLAAPIFNAGR 347 Query: 362 NSANLDLAEVRKNQAVVTYEKTIQTAFREVADALVARGTLDDQVKAQEAFLAAQQERLKL 421 +A DLA ++ + + Y + I AF +V AL A +D Q AQE L Q L Sbjct: 348 LAAGRDLALAQREELLANYRRAIVAAFGDVEVALNAVAGIDAQRIAQEEELRQAQRAFNL 407 Query: 422 TDLRFKNGIASSLDQLDAQRDLFSAQQALIQARQLRLNNAIDLYKALGGG 471 + R++ G +SL LDAQR L++AQ A Q R LRL A+ LYKALGGG Sbjct: 408 AESRYRAGAETSLTLLDAQRTLYAAQDAAAQLRTLRLQAAVSLYKALGGG 457 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.129 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 920,188 Number of extensions: 34353 Number of successful extensions: 248 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 208 Number of HSP's successfully gapped: 14 Length of query: 483 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 396 Effective length of database: 899,382 Effective search space: 356155272 Effective search space used: 356155272 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)