BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0472.p
         (320 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980613|ref|YP_001353946.1| nucleoside-diphosphate-sugar ep...   323   8e-90

>gi|152980613|ref|YP_001353946.1| nucleoside-diphosphate-sugar
           epimerases [Janthinobacterium sp. Marseille]
          Length = 312

 Score =  323 bits (828), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 177/315 (56%), Positives = 225/315 (71%), Gaps = 10/315 (3%)

Query: 3   ILITGASGFVGQALIARLSSDGQHHLRAAVRPSARAIPQDDNVEQVSISGLAADTDWSAA 62
           IL+TGA+GFVG++L A L + G   +     P+ R    DD   +V+I  L A+TDW  A
Sbjct: 4   ILVTGANGFVGRSLCAALRARGIPFV-----PAVRKKSCDD---EVAIGDLNANTDWGMA 55

Query: 63  LHQTQAIVHCAARVHVMSETASDPLAEFRRINVEGTLALARQAQQAGVRRFVFISSIKVN 122
           LH   A++H AARVHVM++T+SDPLA FR +NV+ TL LARQA  AGV+RFVF+SSIKVN
Sbjct: 56  LHGCDAVIHLAARVHVMNDTSSDPLAAFRAVNVDATLNLARQAIAAGVKRFVFVSSIKVN 115

Query: 123 GEQTGPGASFHADDLPAPADPYGISKMEAEQALLELGRTGQMEVVVIRPVLVYGPGVKAN 182
           GE+TG    + A D PAP DPYGISK+EAE AL EL +   +EVV++RP L+YGPGV+AN
Sbjct: 116 GEETGEH-PYTAFDEPAPTDPYGISKLEAEIALKELAQETGLEVVIVRPPLIYGPGVRAN 174

Query: 183 FLSMMRWLDKGVPLPLGGITTNRRSLVALDNLVDLITVCLTHPAAVGQVFLVSDGEDLST 242
           F  +M+ +  G+PLPLG I  NRRS+VA+DNL DL+ +C  HPAAVGQVF+VSD  D+S 
Sbjct: 175 FQRLMQLVKMGLPLPLGAIN-NRRSMVAVDNLHDLLILCTHHPAAVGQVFMVSDDHDVSV 233

Query: 243 TAMLRRLAQALGKSPALLPIPACCLAWAARLLGKAGIAQRLCGSLQVDISKNRELLGWTP 302
           + +LR LA A+ K   LLP+PA  L+ AA LLGK+ +A RL GSLQVDI   +  L W P
Sbjct: 234 SQLLRMLATAMEKKSMLLPVPAALLSGAAALLGKSAVANRLLGSLQVDIKHTKTTLQWHP 293

Query: 303 PTSVDQAFKKTVDAY 317
           P S+D A K+TV AY
Sbjct: 294 PVSMDVALKRTVTAY 308


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 748,159
Number of extensions: 31297
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 237
Effective length of database: 914,170
Effective search space: 216658290
Effective search space used: 216658290
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)