BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0467.p (661 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980034|ref|YP_001353944.1| nucleoside-diphosphate sugar ep... 526 e-150 gi|152980659|ref|YP_001353948.1| capsular polysaccharide synthes... 150 2e-37 >gi|152980034|ref|YP_001353944.1| nucleoside-diphosphate sugar epimerases [Janthinobacterium sp. Marseille] Length = 659 Score = 526 bits (1354), Expect = e-150, Method: Compositional matrix adjust. Identities = 305/644 (47%), Positives = 412/644 (63%), Gaps = 24/644 (3%) Query: 3 RQIIDLPRITKQSIAVVCDVLMCIVATWLAFSLRLDVMHFPEGYQWHVYQI--SPLLLLP 60 + ++LPR KQ IA D+++ + +LA LR D P+ ++ + + I +PL+ +P Sbjct: 2 KSFLELPRFQKQLIAATADLVLLPLTFYLAVLLRYD-SSTPQLFEMYFWMIVAAPLISIP 60 Query: 61 VFVRLGLYRSVFRYTGVAAIVSIAKALVVYGFLLFLFLVWMGLPGVPRSLGILQPLILFP 120 +F+RLGLYR+V R+ + + + + + + + R + + + Sbjct: 61 IFLRLGLYRAVIRFIDQKIVYVVVLGVSLSVICMAALATFAHTAPLSRGVFGIYWVSAIL 120 Query: 121 MIGGSRAFARLWLSQADGERKYHRDSRLLIYGAGPAGAQIADGLAQRRQFTLIGFLDDNP 180 + SR AR +L +AD + R+ IYGAG +G Q+A L ++ + +DD Sbjct: 121 YVVASRFLARGYLLRADD--RGGSAVRVAIYGAGHSGMQLASALRAGHEYLPVALIDDKK 178 Query: 181 ELHGKLINGMKVYPSAEAARVIGLFAVTDVLLALPDTTRARRHEILEGLRKYHVHVSSMP 240 ELHG I G+KV+PS+E R++ + +VLLA+P +A++ ILE L V + P Sbjct: 179 ELHGATIAGVKVWPSSELPRLVAEKQIKEVLLAMPSLRKAQQKLILEQLEPLKVKIKVTP 238 Query: 241 DLTDLARGAVAIADMNELDILDLLGREPVEPNLALISRNIADKVVLVTGAGGSIGSELCR 300 + L G + + D+ +++I DLLGR+ VEP++ L+S I + V+VTGAGGSIGSELCR Sbjct: 239 PIASLVNGELRVQDIRDIEIEDLLGRDAVEPDMRLLSTCITGRTVMVTGAGGSIGSELCR 298 Query: 301 QILAGTPACLLLLEHNEFSLYNIHQELQQEVKRRQ-IEVQLIPLLGSVKDYSRVAQVCRT 359 QI+ P LLLL+ +EF+LY+I QELQ EVKR Q ++V ++P LGSV + + ++ RT Sbjct: 299 QIIRLAPKRLLLLDMSEFALYSIEQELQ-EVKRTQNVDVHVLPFLGSVLESEKCERILRT 357 Query: 360 WRPHTIYHAAAYKHVPLVEHNPAEGIRNNIFGTYHVARAAIECGVADLVLISTDKAVRPT 419 + TIYHAAAYKHVPLVEHNP +GIRNN GT +ARAA+ GV VLISTDKAVRPT Sbjct: 358 YSVDTIYHAAAYKHVPLVEHNPIQGIRNNALGTLCLARAAVAAGVGCFVLISTDKAVRPT 417 Query: 420 NVMGATKRVAEMILQALAATPRPVFHSLPGIAPEFGMGTRFSMVRFGNVLDSSGSVVPLF 479 NVMGATKR+AE+ILQA + GTRF MVRFGNVL SSGSVVPLF Sbjct: 418 NVMGATKRLAELILQAFSRNQD---------------GTRFCMVRFGNVLGSSGSVVPLF 462 Query: 480 RQQIRNGGPITLTDADVTRYFMTIPEAAQLVIQAGAMTENGDVFVLDMGQPVKILDLAYR 539 R+QI +GGPITLT ++TRYFMTIPEAAQLV+QAGAM E GDVFVLDMG+PVKILDLA R Sbjct: 463 RKQIMSGGPITLTHPEITRYFMTIPEAAQLVLQAGAMGEGGDVFVLDMGEPVKILDLATR 522 Query: 540 MVQLSGLIVR-DADNPDGDIEIQITGLRPGEKLYEELLIGQDAKHTVHPRIMRAHEDFLS 598 MV LSG V+ D+D+ D IEIQ GLRPGEKLYEELLIG + + T HP IMRA E + Sbjct: 523 MVHLSGFEVQGDSDSSD-TIEIQHVGLRPGEKLYEELLIGSNVEGTQHPLIMRAQETEIP 581 Query: 599 WSELNTRLDRLQRAVDQNDVPVMTDLLTELVSGYVPNKEVVDWV 642 W++L L L+ A D+ D + LL + V Y P + D++ Sbjct: 582 WADLQKLLLELESACDRFDYEKVRALLLQAVVEYAPQCGIEDFL 625 >gi|152980659|ref|YP_001353948.1| capsular polysaccharide synthesis enzyme [Janthinobacterium sp. Marseille] Length = 336 Score = 150 bits (380), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/295 (32%), Positives = 156/295 (52%), Gaps = 34/295 (11%) Query: 282 DKVVLVTGAGGSIGSELCRQILAGTPACLLLLEHNEFSLYNIHQELQQEVKRRQIEVQLI 341 DKV+++TG GS G+ + ++ L + E +++ ++ Q++++ ++ Sbjct: 4 DKVLMITGGTGSFGNTVLKRFLD--------TDVREIRIFSRDEKKQEDMRIALGNNKVK 55 Query: 342 PLLGSVKDYSRVAQVCRTWRPHTIYHAAAYKHVPLVEHNPAEGIRNNIFGTYHVARAAIE 401 +G V+DY + Q ++HAAA K VP E P E +R N+ GT +V AAI Sbjct: 56 FYIGDVRDYDSLTQAMTGV--DFVFHAAALKQVPSCEFYPMEAVRTNVLGTENVLNAAIS 113 Query: 402 CGVADLVLISTDKAVRPTNVMGATKRVAEMILQALAATPRPVFHSLPGIAPEFGMGTRFS 461 V +V++STDKAV P N MG +K +AE + + A R + P + Sbjct: 114 SKVKRVVVLSTDKAVYPINAMGISKAMAEKL---VIAKSRTIAEGGPVVCS--------- 161 Query: 462 MVRFGNVLDSSGSVVPLFRQQIRNGGPITLTDADVTRYFMTIPEAAQLVIQAGAMTENGD 521 R+GNV+ S GSV+PLF Q+++G PIT+TD ++TR+ M++ ++ LV+ A E GD Sbjct: 162 -TRYGNVMASRGSVIPLFINQLKSGQPITVTDPNMTRFLMSLEDSVDLVLHAFEHAEQGD 220 Query: 522 VFVLDMGQPVKILDLAYRMVQLSGLIVRDADNPDGDIEIQITGLRPGEKLYEELL 576 +FV + DLA + +L L + E+++ G R GEKLYE L+ Sbjct: 221 LFV-QKAPASTVADLAQALRELFQL----------NNEVKVIGTRHGEKLYESLI 264 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.324 0.140 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,527,047 Number of extensions: 65332 Number of successful extensions: 273 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 269 Number of HSP's successfully gapped: 2 Length of query: 661 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 572 Effective length of database: 891,988 Effective search space: 510217136 Effective search space used: 510217136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 133 (55.8 bits)