BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0466.p
         (191 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980050|ref|YP_001353945.1| sugar transferases involved in ...   253   4e-69
gi|152980978|ref|YP_001352321.1| capsular polysaccharide biosynt...   103   5e-24

>gi|152980050|ref|YP_001353945.1| sugar transferases involved in
           lipopolysaccharide synthesis [Janthinobacterium sp.
           Marseille]
          Length = 180

 Score =  253 bits (647), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 117/164 (71%), Positives = 136/164 (82%)

Query: 28  LIALAIKLTSKGPVLYWSDRVGRGNCIFRMPKFRTMRTDTPQLATHLLTQPQQFLTPIGS 87
            IA  +K+TSKGP +YWSDRVG+ N IF+MPKFRTM+ DTP +ATHLLT PQQFLTPIGS
Sbjct: 17  FIAFVVKITSKGPAVYWSDRVGKHNKIFKMPKFRTMQVDTPAVATHLLTDPQQFLTPIGS 76

Query: 88  FLRRSSLDEIPQLWSILKGDMSLVGPRPALFNQDDLVAKRTELGVHMLTPGLTGWAQVNG 147
           FLR+SSLDE+PQLWSILKGDMS VGPRPALFNQDDLVA RT  GV  + PGLTGWAQ+NG
Sbjct: 77  FLRKSSLDELPQLWSILKGDMSFVGPRPALFNQDDLVALRTRFGVDNIKPGLTGWAQING 136

Query: 148 RDDLPIPDKVRFDVEYAHRQSFLFDFRIIILTVIKVFGRSGVSH 191
           RD+LPIP+KV  DVEY   QSF FD +I++LT  KV  + G++H
Sbjct: 137 RDELPIPEKVALDVEYLKLQSFWFDIKILVLTFQKVLKKDGITH 180


>gi|152980978|ref|YP_001352321.1| capsular polysaccharide
           biosynthesis glycosyltransferase [Janthinobacterium sp.
           Marseille]
          Length = 467

 Score =  103 bits (258), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 108/196 (55%), Gaps = 11/196 (5%)

Query: 2   IRKLAKRIVDVT-GCLVALVLFAIPALL-IALAIKLTSKGPVLYWSDRVGRGNCIFRMPK 59
           I  + KR  D+    ++ L+L  +P +L IA+AIK  S GPV++   R G       + K
Sbjct: 272 INSMIKRGSDIVLASIIQLML--LPVMLGIAIAIKAGSPGPVIFRQRRYGLDGEEIIVYK 329

Query: 60  FRTMRTDTPQLATHLLTQPQQFLTPIGSFLRRSSLDEIPQLWSILKGDMSLVGPRPALFN 119
           FR+M            T+  Q +T +G+FLR++SLDE+PQ +++L+G MS+VGPRP    
Sbjct: 330 FRSMTVCEDGARVVQATKDDQRITRVGAFLRKTSLDELPQFFNVLQGRMSIVGPRPHAVA 389

Query: 120 QDDLVAKRTE--LGVHMLTPGLTGWAQVNG-RDDLPIPDK----VRFDVEYAHRQSFLFD 172
            ++L  K+ +  +  H + PG+TGWAQVNG R +    DK    + +D++Y  R S   D
Sbjct: 390 HNELYRKQIKGYMLRHKVRPGITGWAQVNGLRGETDTLDKMEARIAYDLDYLKRWSLALD 449

Query: 173 FRIIILTVIKVFGRSG 188
             II+ T   V  R  
Sbjct: 450 LWIILRTFKVVLTRDN 465


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.328    0.143    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 415,942
Number of extensions: 16481
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 113
Effective length of database: 932,655
Effective search space: 105390015
Effective search space used: 105390015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)