BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0463.p
         (309 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983181|ref|YP_001353967.1| UDP-glucose 4-epimerase [Janthi...    62   3e-11

>gi|152983181|ref|YP_001353967.1| UDP-glucose 4-epimerase
           [Janthinobacterium sp. Marseille]
          Length = 325

 Score = 62.4 bits (150), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 110/284 (38%), Gaps = 46/284 (16%)

Query: 7   IFVAGHRGMVGSAIVRYLNERGYSNVVV------------------------RTHAELDL 42
           I V G  G +GS +V  L + G   VVV                        R  AEL  
Sbjct: 12  ILVTGGAGFIGSHLVDGLLKEGAREVVVIDNLFVGSEDNLNSALATGKVVFYRDDAEL-- 69

Query: 43  TRQEAVTAFMESEKPDYVFLAAAKVGGINANDTYRAEFLYQNLMMECNVIHAAWQAGVQR 102
               ++    ++ + D VF  A K   +N +    A     N+ +  N++    + G + 
Sbjct: 70  --STSLDYIFKNHQIDVVFNCATK--ALNYSFLNPANAFSTNVTVVLNLLEIQRRGGFKT 125

Query: 103 MLFLGSSCIYPRDCPQPIREEYLLTGPLEQTNEPYAIAKIAGVKLCESYNRQYGTQYVAA 162
           +    +S +Y     +P+ E +    P   T   YA  K A     ESY R +       
Sbjct: 126 LCHFSTSEVYGSAVYEPMDEAH----PKNPTTT-YAAGKAAADHAVESYVRMFDLDAFIV 180

Query: 163 MPTNLYGPNDNYDLNNSHVLPAL---IRKAHEAKLRGDTEYVVWGSGKPMREFLYVDDLA 219
            P N YGP  NY    + ++P     I      +L GD        G   R+F+YV D  
Sbjct: 181 RPFNNYGPRQNYKGMLAGIIPITAWRILNGIAPELHGD--------GLQSRDFIYVHDTV 232

Query: 220 AACVHLMESGVSGGLFNIGTGEDITIRELAETVMEVIGFAGKIV 263
            A V L +   +G   NI T   I+I EL   +   +G+AG+IV
Sbjct: 233 DAVVKLYDKMPAGESVNISTDNQISISELLPRICSGMGYAGEIV 276


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 748,798
Number of extensions: 31796
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 309
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 226
Effective length of database: 914,170
Effective search space: 206602420
Effective search space used: 206602420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)