BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0459.p (371 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980084|ref|YP_001353973.1| UDP-N-acetylglucosamine 2-epime... 310 7e-86 gi|152979940|ref|YP_001354315.1| UDP-N-acetylglucosamine 2-epime... 306 1e-84 gi|152980115|ref|YP_001353947.1| UDP-N-acetylglucosamine 2-epime... 109 3e-25 >gi|152980084|ref|YP_001353973.1| UDP-N-acetylglucosamine 2-epimerase [Janthinobacterium sp. Marseille] Length = 374 Score = 310 bits (795), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 163/371 (43%), Positives = 237/371 (63%), Gaps = 11/371 (2%) Query: 5 KVACIFGTRPELIKMAPIIQKLSAAPEFEVASICTGQHRELLTPLLEWFDLPVHHNMDVM 64 K+ +FGTRPE IKMAP+++ L PEF V T QHR++L +LE F++ +++++M Sbjct: 3 KIMVVFGTRPEAIKMAPLVKALQNEPEFVVQVCVTAQHRQMLDQVLELFEIVPDYDLNLM 62 Query: 65 RPGQNLNELAGRLMTEFGKLFAENHYDYVIGQGDTTSVVAAAWAAFHEKIPFLHVEAGLR 124 R GQ+L ++ ++ + E+ D V+ GDT++ AA+ AA++ KI HVEAGLR Sbjct: 63 RQGQDLTDITSNVLVGMRDVLKESKPDIVLVHGDTSTTFAASLAAYYAKIEVGHVEAGLR 122 Query: 125 TFDRNLPFPEEMNRVMVGRLASLHFAPTETSAENLRAEGVAEQDLFMIGNTVIDALQFTA 184 T + P+PEEMNR + G +A++HFAPTE S NL AEGV + + GNTVIDAL Sbjct: 123 TGNPYSPWPEEMNRHLTGSIAAVHFAPTERSRSNLLAEGVRPGSVHVTGNTVIDALLKVV 182 Query: 185 ERVGSDVPRS----------DNGRRMIFMTAHRRENFGEPLLRICSAVRAIVTKFSDVDV 234 + S+ D+ +R+I +T HRRENFG IC A++ I ++ DV++ Sbjct: 183 SFIRSNESLQQEFAARFNYLDSNKRLILVTGHRRENFGAGFENICLALQKIASR-GDVEI 241 Query: 235 VFPVHPNPNVRNIVSSVLGDLPSVKLIDPVPYEQLVGYLLRSHFILTDSGGLQEEAPALG 294 ++PVH NP+V+ V +LG+ +V LI+P+ Y V + RS ILTDSGG+QEEAP+LG Sbjct: 242 LYPVHLNPHVQEPVRRILGNTSAVHLIEPLDYLPFVYLMDRSTLILTDSGGIQEEAPSLG 301 Query: 295 KPVLVLREETERPELVNLGGSLLVGSDEDRIVSEASRLLTDPEFYQKMVLGYSPYGDGKS 354 KPVLV+RE TERPE V+ G LVG D ++I SE ++LL D E Y+ ++PYG+G S Sbjct: 302 KPVLVMRETTERPEAVDAGTVRLVGVDIEKICSETNQLLDDSEAYRMFSRIHNPYGNGTS 361 Query: 355 AERLVEALRQR 365 ++ +V L+ R Sbjct: 362 SQSIVNILKSR 372 >gi|152979940|ref|YP_001354315.1| UDP-N-acetylglucosamine 2-epimerase [Janthinobacterium sp. Marseille] Length = 395 Score = 306 bits (784), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 230/370 (62%), Gaps = 12/370 (3%) Query: 4 IKVACIFGTRPELIKMAPIIQKLSAAPEFEVASICTGQHRELLTPLLEWFDLPVHHNMDV 63 +K+ IFGTRPE IKMAP+++ L A + TGQHR +L ++ FD+ H++DV Sbjct: 1 MKILSIFGTRPEAIKMAPLMRALEQANGIDSVVCITGQHRTMLEQVMSLFDIKADHDLDV 60 Query: 64 MRPGQNLNELAGRLMTEFGKLFAENHYDYVIGQGDTTSVVAAAWAAFHEKIPFLHVEAGL 123 M P Q+LN L R+ + + D V+ GDT++ + AA AAFH +I HVEAGL Sbjct: 61 MVPNQSLNSLCSRIFAKLDPILESEQPDRVLVHGDTSTAMVAATAAFHRRIQVGHVEAGL 120 Query: 124 RTFDRNLPFPEEMNRVMVGRLASLHFAPTETSAENLRAEGVAEQDLFMIGNTVIDALQFT 183 RT D P+PEEMNR ++ ++ FAPT +S +NL E + + + + GNTVIDALQ T Sbjct: 121 RTGDLTQPWPEEMNRRVIDVMSDFLFAPTISSRDNLLRENLGGR-IVVTGNTVIDALQLT 179 Query: 184 AERVGSDV----------PRSDNGRRMIFMTAHRRENFGEPLLRICSAVRAIVTKFSDVD 233 A+R+ D P RR++ +T HRRENFG+ IC A+ A + + D+D Sbjct: 180 AQRLEKDAKLRSTLDAKFPFVSPQRRILLVTGHRRENFGDGFAHICEAL-AKLAERPDID 238 Query: 234 VVFPVHPNPNVRNIVSSVLGDLPSVKLIDPVPYEQLVGYLLRSHFILTDSGGLQEEAPAL 293 +V+PVH NPNVR V +L +LP V LI+P+ Y + V + S+ +LTDSGG+QEEAP+L Sbjct: 239 IVYPVHLNPNVRGPVLQLLSNLPRVHLIEPLDYLEFVRLMQLSYVVLTDSGGVQEEAPSL 298 Query: 294 GKPVLVLREETERPELVNLGGSLLVGSDEDRIVSEASRLLTDPEFYQKMVLGYSPYGDGK 353 GKPVLV+R+ TERPE V G L+G+ + RIV + L D + Y + +PYGDG+ Sbjct: 299 GKPVLVMRDVTERPEAVAAGTVQLIGTSKKRIVDAVNFLFDDAKRYSQFSNVVNPYGDGQ 358 Query: 354 SAERLVEALR 363 ++ R+V AL+ Sbjct: 359 ASSRIVRALQ 368 >gi|152980115|ref|YP_001353947.1| UDP-N-acetylglucosamine 2-epimerase [Janthinobacterium sp. Marseille] Length = 374 Score = 109 bits (273), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 165/345 (47%), Gaps = 22/345 (6%) Query: 5 KVACIFGTRPELIKMAPIIQKLSAAPEFEVASICTGQHRELLTPLLEWFDLPVHH-NMDV 63 KV I GTRPELIKM+ +I +L + + + TGQ+ + + + DL + + + Sbjct: 3 KVMTIVGTRPELIKMSRVIAELEKHTQHIL--VHTGQNYDYELNQVFFDDLEIRKPDYFL 60 Query: 64 MRPGQNLNELAGRLMTEFGKLFAENHYDYVIGQGDTTSVVAAAWAAFHEKIPFLHVEAGL 123 G N + +++ + ++F D V+ GDT S +A A KIP H+EAG Sbjct: 61 DAAGSNAAQTIAQVIMKADEVFEIEKPDAVLLYGDTNSCLAIIPAK-RRKIPVFHMEAGN 119 Query: 124 RTFDRNLPFPEEMNRVMVGRLASLHFAPTETSAENLRAEGVAEQDLFMIGNTVIDALQFT 183 R FD+ +P EE+NR ++ L+ ++ TE + L AEG+ + + G+ + + L F Sbjct: 120 RCFDQRVP--EELNRKVLDHLSDINMVLTEHARRYLLAEGIKPETIIKTGSHMREVLDFY 177 Query: 184 AERVG-SDVPR--SDNGRRMIFMTAHRRENFGEP--LLRICSAVRAIVTKFSDVDVVFPV 238 ++ SDV S R+ ++AHR EN P L + + A+V ++ V+ Sbjct: 178 RPKIALSDVVSRLSLESRKYFLVSAHREENVDSPEALRDLLETLDALVKRYG-YPVLVST 236 Query: 239 HPNPNVRNIVSSVLGDLP---SVKLIDPVPYEQLVGYLLRSHFILTDSGGLQEEAPALGK 295 HP R LG P + L P + + + + +L+DSG + EE L Sbjct: 237 HPRTFKR---LEALGHGPLDERIILSKPFGFIDYIKLQMEAFCVLSDSGTITEETSLLNL 293 Query: 296 PVLVLREETERPELVNLGGSLLVGSDEDRIVSE----ASRLLTDP 336 + LR ERPE +++G ++ G +R++ S+ +DP Sbjct: 294 CSITLRNAHERPEGMDVGTLIMSGLKAERVMEAIDIVTSQYTSDP 338 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 835,374 Number of extensions: 34114 Number of successful extensions: 99 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 90 Number of HSP's successfully gapped: 3 Length of query: 371 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 286 Effective length of database: 906,776 Effective search space: 259337936 Effective search space used: 259337936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)