BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0451.p
         (428 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981059|ref|YP_001354636.1| dihydroorotase, multifunctional...   703   0.0  

>gi|152981059|ref|YP_001354636.1| dihydroorotase, multifunctional
           complex type [Janthinobacterium sp. Marseille]
          Length = 427

 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/428 (79%), Positives = 386/428 (90%), Gaps = 1/428 (0%)

Query: 1   MKLHIKNGRLIDPANGIDAQQDVYVAAGKIVGVGQAPADFVANKTIDATGLIVAPGLVDL 60
           MK+HIKNG L+DPANGIDAQQDVY+AAGKI G+G+AP  F A+K IDA+GLIVAPGLVDL
Sbjct: 1   MKIHIKNGHLVDPANGIDAQQDVYIAAGKIAGIGKAPEGFTASKVIDASGLIVAPGLVDL 60

Query: 61  SARLREPGYEYKATLESEMQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARSLNQAH 120
           SARLREPGYE+KATLESEMQAA+QGGVTSLVCPPDT+PVLDEPGLVEMLKHRA+SLNQAH
Sbjct: 61  SARLREPGYEHKATLESEMQAAVQGGVTSLVCPPDTEPVLDEPGLVEMLKHRAKSLNQAH 120

Query: 121 VYPLGALTAGLKGKALTEMAELTEAGCIGFSQAEEPITDTTVLLSALQYAKTFNYTVWLR 180
           VYPLGALTAGLKG++LTEMAEL+EAGCIGFSQA+ PI DTTVLL A+QYAKTF YTVWLR
Sbjct: 121 VYPLGALTAGLKGESLTEMAELSEAGCIGFSQADNPILDTTVLLRAMQYAKTFEYTVWLR 180

Query: 181 PQDPHLGRSGIAHSGPAASRLGLSGVPVMSETIALYTLFELMRATGARVHLCRMSSAAGL 240
           PQDPHLGR+G+AHSGP ASRLGLSGVPVM+ET+AL+T+ EL+R TG RVHLCRMS+AAGL
Sbjct: 181 PQDPHLGRTGVAHSGPVASRLGLSGVPVMAETVALHTILELVRVTGTRVHLCRMSTAAGL 240

Query: 241 ELVRQAKSEGLPVTCDVGVHHIHLCDLDIGFFDSNARMTPPLRSQRDREAIRTALLDGTI 300
           ELVR AK EGLPV+CDVG HH+HL + DIGFFDSNAR+TPPLRSQRDR+AIR ALLDGTI
Sbjct: 241 ELVRAAKKEGLPVSCDVGAHHVHLTENDIGFFDSNARLTPPLRSQRDRDAIRNALLDGTI 300

Query: 301 DAVCSDHTPVDDDEKLLPFGEASPGATGLELLLSLSLKWALETEGQGKEVLSKAISKVTH 360
           DA+CSDHTPVDDDEKLLPFGEASPGATGLELLLSL+LKWA E    GK+ +++A++KVT 
Sbjct: 301 DAICSDHTPVDDDEKLLPFGEASPGATGLELLLSLALKWA-EDCVDGKQQVARAVAKVTT 359

Query: 361 RAAKVAGLKAGNLAVGSAADLCLFDPNALWKVQGAALASQGKHTPFLGYELPGVVKATIV 420
            AA++ GL +G L+VGS AD+CLFDPN  W V    LASQGKHTPFLGYEL G VK TIV
Sbjct: 360 DAARIVGLPSGQLSVGSVADICLFDPNERWTVAAKVLASQGKHTPFLGYELAGQVKTTIV 419

Query: 421 SGHIAFER 428
           +GHIAF+R
Sbjct: 420 AGHIAFQR 427


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 974,583
Number of extensions: 38845
Number of successful extensions: 138
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 342
Effective length of database: 903,079
Effective search space: 308853018
Effective search space used: 308853018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)