BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0450.p
         (319 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980634|ref|YP_001354637.1| aspartate carbamoyltransferase ...   608   e-175
gi|152979907|ref|YP_001352538.1| ornithine carbamoyltransferase ...    69   4e-13

>gi|152980634|ref|YP_001354637.1| aspartate carbamoyltransferase
           catalytic subunit [Janthinobacterium sp. Marseille]
          Length = 319

 Score =  608 bits (1568), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 297/319 (93%), Positives = 309/319 (96%)

Query: 1   MLNPQLNKNGELQHLLTIEGLPRAILTHILDTASSFVSIGDREVKKVPLMRGKSVFNLFF 60
           M NPQLNKNGELQHLLTIEGLP+A + HILDTASSFVSIGDREVKKVPLMRGKSVFNLFF
Sbjct: 1   MFNPQLNKNGELQHLLTIEGLPKANILHILDTASSFVSIGDREVKKVPLMRGKSVFNLFF 60

Query: 61  ENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMFVVRHAQSG 120
           ENSTRTRTTFEIASKRLSADVINLNIQASS+SKGESLLDTIDNL+AMHADMFVVRHAQSG
Sbjct: 61  ENSTRTRTTFEIASKRLSADVINLNIQASSSSKGESLLDTIDNLSAMHADMFVVRHAQSG 120

Query: 121 APFLIAKHLIDTKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNLRVAIVGDILH 180
           AP+LIAKHL DT QSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDF+NL VAIVGDILH
Sbjct: 121 APYLIAKHLSDTSQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFSNLTVAIVGDILH 180

Query: 181 SRVARSDIHALTTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEGLKDVDVIIMLRLQN 240
           SRVARSDIHALTTLGVPE+RAIGPRTLLPSGLEQMGVRVF ++ +GLKDVDVIIMLRLQN
Sbjct: 181 SRVARSDIHALTTLGVPEIRAIGPRTLLPSGLEQMGVRVFTDINKGLKDVDVIIMLRLQN 240

Query: 241 ERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRGVEIDSAVADGAQAVILP 300
           ERMSGALLPSAQEFFKSYGLT ERLALAKPDAIVMHPGPMNRGVEI+SAVADG QAVILP
Sbjct: 241 ERMSGALLPSAQEFFKSYGLTTERLALAKPDAIVMHPGPMNRGVEIESAVADGTQAVILP 300

Query: 301 QVTFGIAVRMAVMSIVAGN 319
           QVTFGIAVRMAVMSI+AGN
Sbjct: 301 QVTFGIAVRMAVMSILAGN 319


>gi|152979907|ref|YP_001352538.1| ornithine carbamoyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 304

 Score = 68.9 bits (167), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 64/270 (23%), Positives = 117/270 (43%), Gaps = 20/270 (7%)

Query: 53  KSVFNLFFENSTRTRTTFEIASKRLSADVINLNIQASSTSKGESLLDTIDNLAAMHADMF 112
           +++  +F +NSTRTR +FE    +L    I LN + S   +GE + D    ++ M  D+ 
Sbjct: 43  RTLVMVFEKNSTRTRLSFEAGMHQLGGAAIYLNTRDSQLGRGEPVEDAAQVMSRM-CDII 101

Query: 113 VVRHAQSGAPFLIAKHLID--TKQSHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFTNL 170
           ++R           + +I+     S V V+N     H HP Q L D++T    +      
Sbjct: 102 MIR--------TFGQEIIERFAANSRVPVINGLTNEH-HPCQVLADVFTYIEQRGSIKGK 152

Query: 171 RVAIVGD---ILHSRVARSDIHAL-TTLGVPEVRAIGPRTLLPSGLEQMGVRVFHNMEEG 226
            VA +GD   +L+S +  + +      +  P+   I P  +              +   G
Sbjct: 153 TVAWIGDANNMLYSWLQAAQVFDFHVNVSTPKGYEIDPTLVAQDNTHYTLYASPSDACAG 212

Query: 227 LKDVDVIIMLRLQNERMSGALLPSAQEFFKSYGLTPERLALAKPDAIVMHPGPMNRGVEI 286
              V   +   +  E  + A L +    F  + +   ++  A+PDA+ MH  P +RG E+
Sbjct: 213 AHLVTTDVWTSMGFEEENAARLKA----FDGWIVDAAKMKRAQPDALFMHCLPAHRGEEV 268

Query: 287 DSAVADGAQAVILPQVTFGIAVRMAVMSIV 316
            + V DG Q+V+  +    + V+ A++  +
Sbjct: 269 AAEVIDGPQSVVWDEAENRLHVQKALLEYL 298


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 723,370
Number of extensions: 29426
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 319
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 236
Effective length of database: 914,170
Effective search space: 215744120
Effective search space used: 215744120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)