BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0449.p
         (170 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981536|ref|YP_001354638.1| bifunctional pyrimidine regulat...   270   3e-74
gi|152981721|ref|YP_001355257.1| transcriptional regulator PyrR ...   147   4e-37

>gi|152981536|ref|YP_001354638.1| bifunctional pyrimidine regulatory
           protein PyrR uracil phosphoribosyltransferase
           [Janthinobacterium sp. Marseille]
          Length = 187

 Score =  270 bits (691), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 130/162 (80%), Positives = 145/162 (89%)

Query: 8   LDAEALYQTLVQQIQAGLQGATEVALVGIHSGGAWLAERLASELGLAERLGFVDVSFYRD 67
           LDAEALYQ L QQ++AGL  A  VA+VGIHSGGAWLAERLA EL L ERLGF+DVSFYRD
Sbjct: 25  LDAEALYQVLAQQVKAGLAHAENVAIVGIHSGGAWLAERLAQELQLTERLGFIDVSFYRD 84

Query: 68  DFSEKGLRADVKPSQIPFDVEGATILLVDDVLYTGRTTRAAINELFDYGRPARVLLAALV 127
           DFSEKGLR DVKP+QIPFDV+GATILLVDDVLYTGRTTRAAINELFDYGRPAR++LAAL 
Sbjct: 85  DFSEKGLRPDVKPTQIPFDVDGATILLVDDVLYTGRTTRAAINELFDYGRPARIMLAALA 144

Query: 128 DRGGRELPIAADFVAASVELSKQENLQLQRADDGRFSLTVVH 169
           DRGGRELP+AADFVA ++ +  +++L LQRADDGRFSLTV H
Sbjct: 145 DRGGRELPVAADFVAKTISIPGEQSLVLQRADDGRFSLTVDH 186


>gi|152981721|ref|YP_001355257.1| transcriptional regulator PyrR
           [Janthinobacterium sp. Marseille]
          Length = 171

 Score =  147 bits (371), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 71/156 (45%), Positives = 104/156 (66%), Gaps = 2/156 (1%)

Query: 6   SQLDAEALYQTLVQQIQAGLQGATEVALVGIHSGGAWLAERLASELGLAERLGFVDVSFY 65
           S+L+  AL + L   ++  +  +T+  L+GIH+GG W+AE L + L L   +G +DVS+ 
Sbjct: 3   SKLNGTALCRRLANLMRPHVNRSTK--LIGIHTGGIWVAEYLRTALELTSPIGTLDVSYQ 60

Query: 66  RDDFSEKGLRADVKPSQIPFDVEGATILLVDDVLYTGRTTRAAINELFDYGRPARVLLAA 125
           RDD   + L   V  S+IPFD+ G  I++VDDVLYTGRT RAAINE+F+YGRP ++ LA 
Sbjct: 61  RDDCGHRQLNFGVHRSKIPFDMNGQQIIIVDDVLYTGRTIRAAINEVFEYGRPEKIELAV 120

Query: 126 LVDRGGRELPIAADFVAASVELSKQENLQLQRADDG 161
           +V+RGG ELP+   F A  + L   ++L+L R ++G
Sbjct: 121 VVNRGGHELPVKETFCAKHINLPYTQSLKLIRDNEG 156


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 391,605
Number of extensions: 15762
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 2
Length of query: 170
Length of database: 1,221,021
Length adjustment: 77
Effective length of query: 93
Effective length of database: 936,352
Effective search space: 87080736
Effective search space used: 87080736
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)