BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0447.p
         (193 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981307|ref|YP_001354640.1| transcriptional regulator [Jant...   274   2e-75

>gi|152981307|ref|YP_001354640.1| transcriptional regulator
           [Janthinobacterium sp. Marseille]
          Length = 221

 Score =  274 bits (701), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 130/192 (67%), Positives = 161/192 (83%), Gaps = 4/192 (2%)

Query: 2   ELDLTNHFLIAMPSMLDPIFGGTVVYLCEHNHNGALGVVINKPTDMTMDVLFDRINLKLE 61
            L+L +HFLIAMPSMLDP+FGGTVVYLCEHN NGALGV+INK TDMT+DVL +RI+L LE
Sbjct: 34  SLNLADHFLIAMPSMLDPVFGGTVVYLCEHNANGALGVIINKATDMTVDVLLNRIDLTLE 93

Query: 62  IRPDTPDAMPELYRRPVMFGGPVQVERGFVLHSTSEKYSSTLQVTDEVALTTSKDVLEAV 121
           I P+    +  L R PV++GGPVQ +RGFVLH+    +SSTL VT+E++LTTSKD+L AV
Sbjct: 94  IAPE----LSALDRAPVLYGGPVQADRGFVLHAPRGDFSSTLPVTEEISLTTSKDILAAV 149

Query: 122 AHGDGPERVLVTLGCSGWSPGQLEGEIGRNGWLTVKADPAIIFELPVEQRFTAALALLGI 181
           A G GP+R+LV+LGC+GW  GQLE EI RNGWLTV+ADPA++F++P+EQRF AA+ LLGI
Sbjct: 150 ALGSGPQRMLVSLGCAGWGAGQLEDEITRNGWLTVRADPAVLFDMPLEQRFVAAIKLLGI 209

Query: 182 DPVMLSGDAGRA 193
           DP+MLSG+AG A
Sbjct: 210 DPMMLSGEAGHA 221


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.139    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 490,389
Number of extensions: 19666
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 115
Effective length of database: 932,655
Effective search space: 107255325
Effective search space used: 107255325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)