BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0445.p
         (267 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica...    67   9e-13
gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys...    65   5e-12
gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport syst...    63   2e-11

>gi|152981359|ref|YP_001354307.1| ABC-type
           nitrate/sulfonate/bicarbonate transport system, permease
           component [Janthinobacterium sp. Marseille]
          Length = 296

 Score = 67.4 bits (163), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 16/246 (6%)

Query: 25  IALLLMWQIVCTLLEVPPYLVPTPALIAKTLVADWGMLMESLLVTLKIT----FLAFVLA 80
           +A+L   ++   L  +   L+P P+ I +TL A   +L + LLV +  +    F  + + 
Sbjct: 55  LAVLGFVEVAAQLGWIQARLLPPPSEIVQTLSA---LLEQGLLVHISASVARVFSGYAIG 111

Query: 81  VILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAPLIIIWVK-DTTAALTVCATIMA 139
            +L +        S+  E    P    L+  P +A  PL+++W   D T  +T+ A I A
Sbjct: 112 AVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETPKITLIA-IGA 170

Query: 140 LFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPYFFGGLRISSGLALIG 199
            FPI      G+R+V+  L+ L  +   +     RR+ +P+ALP  F GLR    LA + 
Sbjct: 171 FFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLRNGLSLAWMF 230

Query: 200 AVVAEFVAGTGGTGSGLAYQILQAGFQLNIPR-LFAALLLITLTGILLFWLMSALSRAML 258
            V AE +A T G G      +L  G + + P  + AA+ L+ + G L   L+  L    L
Sbjct: 231 LVAAELIAATKGIG-----YLLTDGRETSRPDVVLAAIFLLAILGKLTDGLLKWLETRKL 285

Query: 259 AGWHES 264
           A W +S
Sbjct: 286 A-WSDS 290


>gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system
           permease protein [Janthinobacterium sp. Marseille]
          Length = 276

 Score = 65.1 bits (157), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/260 (25%), Positives = 113/260 (43%), Gaps = 21/260 (8%)

Query: 12  PGFWRV-----VAPLSIGIALLLMWQIVCTLLEVPPYLVPTPALIAKTLVADW-----GM 61
           P  WR      + P  + + L+ +WQI   L  +   ++P P  +AK   A W     G 
Sbjct: 19  PSTWRASGLKKLVPWIVPVLLISVWQIASQLGWLSSRILPEPFAVAK---AAWELALSGE 75

Query: 62  LMESLLVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAPLII 121
           L   + V+L     +F +   LG+ +  +    +  E  L     +++  P +A+ PL+I
Sbjct: 76  LWTHVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVI 135

Query: 122 IWVKDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSA 181
           +W      +      +   FP+  NT  G+RSV+ GL+ + +    + W   R + +P A
Sbjct: 136 LWFGIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGA 195

Query: 182 LPYFFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLITL 241
           LP    G+R S GL  +  +VAE ++      SG+ Y  + A   L    +   +LL  L
Sbjct: 196 LPSILVGVRFSLGLVWVLLIVAETISAQ----SGIGYMTMNAREFLQTDVVLVGILLYAL 251

Query: 242 TGILLFWLMSALSRAMLAGW 261
            G     L   +SR +   W
Sbjct: 252 LGK----LADVVSRTLEGYW 267


>gi|152981495|ref|YP_001352171.1| ABC-type nitrate transport system,
           permease component [Janthinobacterium sp. Marseille]
          Length = 309

 Score = 63.2 bits (152), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 103/192 (53%), Gaps = 4/192 (2%)

Query: 65  SLLVTLKITFLAFVLAVILGVSIAFVFVQSRFIEVSLFPYAIILQVTPIVAIAPLIIIWV 124
           ++L +LK   + F +A ++G+ + F+  + +F+     P   +L+    +A  P+ ++  
Sbjct: 114 NILASLKRVGMGFGMAALVGIPLGFMIGRFKFLSGMFNPIISLLKPVSPLAWLPIGLLVF 173

Query: 125 KDTTAALTVCATIMALFPIISNTTLGLRSVNPGLLNLFRLNKATRWQTLRRLRIPSALPY 184
           K    A      I +++P+I NT +G++ V    +N+ ++ K + W+ + ++  PS LPY
Sbjct: 174 KAADPAAIWSIFICSIWPMIINTAVGVQRVPQDYMNVAKVLKLSEWKIVTKILFPSVLPY 233

Query: 185 FFGGLRISSGLALIGAVVAEFVAGTGGTGSGLAYQILQAGFQLNIPRLFAALLLITLTGI 244
              G+R++ G A +  V AE + G    G G+ + +      LN+P +  A+++I + G+
Sbjct: 234 MLTGVRLAIGTAWLVIVAAEMLTG----GVGIGFWVWDEWNNLNVPHIIIAIVVIGVVGL 289

Query: 245 LLFWLMSALSRA 256
           +L  ++  ++RA
Sbjct: 290 ILEQILVGIARA 301


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.330    0.142    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 587,871
Number of extensions: 23119
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 5
Length of query: 267
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 185
Effective length of database: 917,867
Effective search space: 169805395
Effective search space used: 169805395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)