BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0444.p (260 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 201 5e-53 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 172 3e-44 gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 169 2e-43 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 168 3e-43 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 163 1e-41 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 201 bits (510), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 111/244 (45%), Positives = 149/244 (61%), Gaps = 9/244 (3%) Query: 7 VEKTYRNG---TRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWG 63 V K + G +AL EV L I +GEFV L+G SGCGKSTLL++ AG E S G +G Sbjct: 19 VSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSSGSANMYG 78 Query: 64 GNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLVGLE 123 + +PER MVFQ+ L PW TV++N R++P+A+ + A +VGL Sbjct: 79 MPIDG-PSPER--GMVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAYYTDMVGLT 135 Query: 124 KFHKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQD 183 KF P +LSGGM+ R +IAR LA +LLMDEPFGALD TR KL DL +IW + Sbjct: 136 KFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLEIWERTK 195 Query: 184 LTVVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIEVDGPRDEAFRISAPFMQYCKTLS 243 +TVVFVTH++ EAV LS RV+VM A PGR+ D+ +++ PRD + F + + ++ Sbjct: 196 VTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDIT---AVEFNEIRRDIT 252 Query: 244 DYLT 247 YLT Sbjct: 253 QYLT 256 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 172 bits (435), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 95/227 (41%), Positives = 139/227 (61%), Gaps = 10/227 (4%) Query: 7 VEKTYR--NGT--RALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWW 62 V+K+++ +GT L++V + GE V+LLG SG GKSTLL++ AGL G + Sbjct: 12 VDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADSGSAMYR 71 Query: 63 GGNLATVGTPERTLAMVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLVGL 122 G N+ P +AMVFQ L PW TV+QN L LE + VP A+ + R L L+GL Sbjct: 72 GKNIYG---PVAGIAMVFQSFALFPWLTVQQNVELGLEAQGVPPAEREKRADAMLDLIGL 128 Query: 123 EKFHKVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQ 182 F LPRELSGGM+ R IAR L T P++LLMDE F ALD T L D+ ++W + Sbjct: 129 AGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILEMWEEN 188 Query: 183 DLT---VVFVTHSIYEAVFLSSRVIVMAARPGRVIADVAIEVDGPRD 226 + ++ V+H+I EAV +S R++V+++ PGR+ +++ I++ PR+ Sbjct: 189 RIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIKIDLPRPRN 235 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 96/211 (45%), Positives = 127/211 (60%), Gaps = 5/211 (2%) Query: 9 KTYRNGTRALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLAT 68 +T RA V D+ + + LLGPSGCGKSTLLK AG P G IR G + Sbjct: 50 RTRERVVRATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAGFILPVEGEIRLDGKAVTA 109 Query: 69 VGTPERTLAMVFQE-ATLMPWATVEQNARLPL-ELRHVPRAQADARVAEALKLVGLEKFH 126 G P+R + VFQE L PW TV+QN PL R + R +A+ R L VGL KF Sbjct: 110 PG-PDRIV--VFQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAEERALHYLAKVGLSKFS 166 Query: 127 KVLPRELSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLTV 186 V P +LSGGM+ R +IARALA P +LLMDEPF ALD TR K+ +L +W + T+ Sbjct: 167 DVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKMQEELLQLWDEVHFTL 226 Query: 187 VFVTHSIYEAVFLSSRVIVMAARPGRVIADV 217 +FVTHSI EA+ + +R+ +++ PGR+ A++ Sbjct: 227 LFVTHSIEEALVVGNRIALLSPHPGRMRAEI 257 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 168 bits (426), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 98/229 (42%), Positives = 131/229 (57%), Gaps = 7/229 (3%) Query: 18 LDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVGTPERTLA 77 + ++ L I GEFV+++G SG GKSTLL+ AGL PS G ++ L R A Sbjct: 22 IQDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSGDVQLKLPQLPG----RRRRA 77 Query: 78 MVFQEATLMPWATVEQNARLPLELRHVPRAQADARVAEALKLVGLEKFHKVLPRELSGGM 137 +VFQ+ L+PW TV N LE + + +R+ +AL+L GL +F + P +LSGG Sbjct: 78 VVFQDGRLLPWRTVADNVAYGLETLGISADEQQSRIKQALQLTGLAEFGERWPHQLSGGQ 137 Query: 138 QMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHSIYEAV 197 R IARALA P+LLLMDEPF A+D TR L A+L IW V+FVTH I EAV Sbjct: 138 VQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRIWQATQSAVMFVTHDIDEAV 197 Query: 198 FLSSRVIVMAARPGRVIADVAIEVDGPRDEAFRISAPFMQYCKTLSDYL 246 FL+ RVIV+ P V+ ++ I++ PR R F +Y LS L Sbjct: 198 FLADRVIVLGGSPATVVENLRIDLPRPR---VRSDVAFAEYVAHLSTQL 243 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 163 bits (413), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 136/236 (57%), Gaps = 10/236 (4%) Query: 17 ALDEVKLDIGRGEFVSLLGPSGCGKSTLLKMFAGLEEPSHGHIRWWGGNLATVG-TPERT 75 AL V L + +GEF++L+G SGCGKSTLL + AGL + + G + GN G +PER Sbjct: 27 ALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGML--LCGNREIAGPSPER- 83 Query: 76 LAMVFQEATLMPWATVEQNARLPLELRHV---PRAQADARVAEALKLVGLEKFHKVLPRE 132 A+VFQ +L+PW T +N L +E +A+ AR AL LVGL + P E Sbjct: 84 -AVVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHAEQKRPNE 142 Query: 133 LSGGMQMRASIARALATSPNLLLMDEPFGALDEFTRNKLDADLRDIWSKQDLTVVFVTHS 192 +SGGM+ R IARAL+ P +LLMDEPFGALD TR L +L I + TVV VTH Sbjct: 143 ISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHD 202 Query: 193 IYEAVFLSSRVIVMAARPGRVIADV-AIEVDGPRDEAFRISAP-FMQYCKTLSDYL 246 + EAV LS R++++ P I ++ +++ PR+ P + QY + ++L Sbjct: 203 VDEAVLLSDRIVMLTNGPSATIGEILEVKLARPRERVMLAQDPLYSQYRTAVLEFL 258 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 589,277 Number of extensions: 23689 Number of successful extensions: 246 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 63 Length of query: 260 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 179 Effective length of database: 921,564 Effective search space: 164959956 Effective search space used: 164959956 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)