BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0440.p (339 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxyg... 239 2e-64 gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxyg... 234 5e-63 gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxyg... 205 3e-54 gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [... 200 8e-53 gi|152983026|ref|YP_001352579.1| ferredoxin/oxidoreductase FAD/N... 177 8e-46 >gi|152981483|ref|YP_001351917.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 321 Score = 239 bits (610), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/331 (46%), Positives = 191/331 (57%), Gaps = 16/331 (4%) Query: 14 TTLRLRVRAVRHAAEGIRLFELVA--QEDAALPPWTPGAHLRLHLQDGLVRAYSLCNTPQ 71 T+++RV++ AE + FELV E+A LP GAH+ +HL +GLVR YSL + Sbjct: 2 NTMQVRVKSKWQCAEEVAAFELVNADDENAPLPAAEAGAHIDVHLPNGLVRQYSLTDCRT 61 Query: 72 QRDFYVIAVKRESDSRGGSAFLHEQVQQGDSISASPPVNAFPLIADPRAPLLLAAGIGIT 131 YVI VKRE +SRGGSA +HE V QGD + S P N FPL LL+A GIGIT Sbjct: 62 GACSYVIGVKREPNSRGGSAAMHELVMQGDVLQISLPRNNFPLQKASGPTLLIAGGIGIT 121 Query: 132 PLHAMAAEMA---AQRRRHRLHYFARSLAHAAFFHELAACSQGMSLHLGLDGSETERAIA 188 PL AMA +A A R ++ LHYF RS HAAF E+AA Q + G D ET + I Sbjct: 122 PLLAMARALAADPACREKYALHYFCRSPLHAAFSKEIAALQQADGMVYGADADETAKHIR 181 Query: 189 AALAAVPSSSPLYVCGPAPFIGAARRHAQLAGWHESDIHFEWFAAPVMANAEPQSAAQAH 248 L P + +Y CGP P I A+ GW E IH E+F+ V H Sbjct: 182 QLLQQRPEGAHVYTCGPGPMIATVVDTARECGWPEDAIHVEYFSNQV-----------DH 230 Query: 249 AEERVFELVLQRSGLRCEVQPGQSIVAAAAQLGVVIGTSCGEGFCGSCESTVLDGQPLHR 308 ER F + S L +V GQSIV AAA+ G+ I TSC +G CG+C + VL GQP HR Sbjct: 231 GGERPFRVRCAGSKLEFQVAVGQSIVEAAAEAGLAIATSCEQGVCGTCLTNVLSGQPEHR 290 Query: 309 DSVLSDAERASGRRILPCVSRCAGTRLVLDL 339 D L+DAE+ASG+++L CVSRC G LVLDL Sbjct: 291 DLYLTDAEKASGKQMLLCVSRCRGDELVLDL 321 >gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 319 Score = 234 bits (597), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 139/328 (42%), Positives = 184/328 (56%), Gaps = 12/328 (3%) Query: 14 TTLRLRVRAVRHAAEGIRLFELVAQEDAALPPWTPGAHLRLHLQDGLVRAYSLCNTPQQR 73 TTL +RV + A I+ FEL + ALP +TPG+H+ +H+ +GL+R YSLCN P + Sbjct: 2 TTLTVRVHKITQEACDIKSFELRSVSGEALPAFTPGSHIDVHIGEGLIRQYSLCNGPDEP 61 Query: 74 DFYVIAVKRESDSRGGSAFLHEQVQQGDSISASPPVNAFPLIADPRAPLLLAAGIGITPL 133 D Y+IAVK+E SRGGS +HE +++GD I S P N FPL LLLA GIG+TP+ Sbjct: 62 DRYLIAVKKEVTSRGGSQAMHESIREGDQIKISAPRNNFPLEQSQGPYLLLAGGIGVTPV 121 Query: 134 HAMAAEMAAQRRRHRLHYFARSLAHAAFFHELAACS-QG-MSLHLGLDGSETERAIAAAL 191 +MA + AQ L YF RS+AH AF L+ QG + H L+ + L Sbjct: 122 LSMARHLLAQGVEFELQYFTRSIAHTAFHALLSEPEFQGRIKFHYALEPEGLRAYLRKLL 181 Query: 192 AAVPSSSPLYVCGPAPFIGAARRHAQLAGWHESDIHFEWFAAPVMANAEPQSAAQAHAEE 251 P + LY+CGP F+ A A W +H E+F +A+P S A E+ Sbjct: 182 WHYPENGSLYLCGPRVFMDLVESTAA-ATWPPEAVHLEYF------SADPLSLA---GEQ 231 Query: 252 RVFELVLQRSGLRCEVQPGQSIVAAAAQLGVVIGTSCGEGFCGSCESTVLDGQPLHRDSV 311 FE+ L R+G V G I A A G+ I TSC +G CG+C + VL+G P HRD Sbjct: 232 ESFEVRLARTGGTYAVPAGMPITEALAAHGIHIDTSCEQGVCGTCLTGVLEGTPDHRDVY 291 Query: 312 LSDAERASGRRILPCVSRCAGTRLVLDL 339 LSDAE+ S +I+PCVSR LVLDL Sbjct: 292 LSDAEKKSCDKIMPCVSRAKSPLLVLDL 319 >gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 327 Score = 205 bits (522), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/339 (38%), Positives = 182/339 (53%), Gaps = 23/339 (6%) Query: 11 NAATTLRLRVRAVRHAAEGIRLFELVAQEDAALPPWTPGAHLRLHLQDGLVRAYSLCNTP 70 N T ++ VRA+R AE IR FEL LP GAH+ +HL +GLVR YSL + P Sbjct: 2 NEQETRQVWVRAIRIEAEQIRSFELCPLAGERLPAAAAGAHIDVHLPNGLVRQYSLLH-P 60 Query: 71 QQRDFYVIAVKRESDSRGGSAFLHEQVQQGDSISASPPVNAFPLIADPRAPLLLAAGIGI 130 + Y+I V R+ SRGGS++LHE V+ GD ++ S P N FPL + +L+A GIGI Sbjct: 61 GESKAYMIGVNRDPVSRGGSSYLHEAVKPGDVLTISVPRNNFPLHEEAAHSVLIAGGIGI 120 Query: 131 TPLHAMAAEMAAQRRRHRLHYFARSLAHAAFFHEL---AACSQGMSLHLGLDGSETERAI 187 TP+ +M + R L+Y R+ AAF EL AA ++ +LH D + + Sbjct: 121 TPIFSMVQRLNQIGRAWTLYYCTRTEERAAFLDELKTLAATTETGNLHTVFDQVPGNQML 180 Query: 188 AAALAAVPSSSP------LYVCGPAPFI-GAARRHAQLAGWHESDIHFEWFAAPVMANAE 240 A S + Y CGP + G + A +A +H E+F+AP +A Sbjct: 181 NLAELVQHSEAEHAGAAHFYCCGPGMLLQGFQQATATVAA---ERVHVEYFSAPAVA--- 234 Query: 241 PQSAAQAHAEERVFELVLQRSGLRCEVQPGQSIVAAAAQLGVVIGTSCGEGFCGSCESTV 300 ++ + F + L RSG ++ QSI+ GV + +SC EG CGSCE+ V Sbjct: 235 ------SNVAAKTFSVTLARSGQTFQIPADQSILEVLLSKGVSVLSSCREGVCGSCETAV 288 Query: 301 LDGQPLHRDSVLSDAERASGRRILPCVSRCAGTRLVLDL 339 L G+P HRD+VLS AERA R ++ CVSRC GT L LDL Sbjct: 289 LAGEPEHRDAVLSAAERADNRTMMLCVSRCKGTSLTLDL 327 >gi|152981877|ref|YP_001355367.1| hypothetical protein mma_3677 [Janthinobacterium sp. Marseille] Length = 580 Score = 200 bits (509), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 115/313 (36%), Positives = 161/313 (51%), Gaps = 12/313 (3%) Query: 27 AEGIRLFELVAQEDAALPPWTPGAHLRLHLQDGLVRAYSLCNTPQQRDFYVIAVKRESDS 86 ++G+ FEL + LPP GAH+ L GLVR YS+ N P +R I VK E DS Sbjct: 280 SDGVMAFELRSIS-GKLPPMQAGAHINLRTPSGLVRQYSIVNAPTERATLTIGVKLEPDS 338 Query: 87 RGGSAFLHEQVQQGDSISASPPVNAFPLIADPRAPLLLAAGIGITPLHAMAAEMAAQRRR 146 RGGSA +H G + P N FPL+ P+ P+L+A GIGITPL +MA + A + Sbjct: 339 RGGSASMHASALPGTHLEFVPTRNTFPLLDTPKYPVLIAGGIGITPLVSMAQALHAAGKD 398 Query: 147 HRLHYFARSLAHAAFFHELAACSQGMSLHLGLDGSETERAIAAALAAVPSSSPLYVCGPA 206 RLHYF RS H +F +AA + LH ET+ + L +Y CGP Sbjct: 399 FRLHYFVRSDEHVSFASRMAAFQDKLVLHAACTPQETKSILDQVLTQSSQPQIVYACGPG 458 Query: 207 PFIGAARRHAQLAGWHESDIHFEWFAAPVMANAEPQSAAQAHAEERVFELVLQRSGLRCE 266 P + R Q AG ++D+ FE F + + + F + L+R+G Sbjct: 459 PMLTTIRACTQAAGMPDADVRFEIF-----------RNDKDFGDGKPFTVKLKRNGQTIT 507 Query: 267 VQPGQSIVAAAAQLGVVIGTSCGEGFCGSCESTVLDGQPLHRDSVLSDAERASGRRILPC 326 V G++++AA + G+ + SC +G CGSC + V G P HRDS L+ E+A+ ++ C Sbjct: 508 VPRGETLLAALKRNGIPVEASCEQGICGSCLTRVSSGVPEHRDSYLTPQEKAANTCMMAC 567 Query: 327 VSRCAGTRLVLDL 339 VSR L LDL Sbjct: 568 VSRAISEELELDL 580 >gi|152983026|ref|YP_001352579.1| ferredoxin/oxidoreductase FAD/NAD(P)-binding [Janthinobacterium sp. Marseille] Length = 310 Score = 177 bits (449), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 107/315 (33%), Positives = 154/315 (48%), Gaps = 15/315 (4%) Query: 16 LRLRVRAVRHAAEGIRLFELVAQEDAALPPWTPGAHLRLHLQDGLVRAYSLCNTPQQRDF 75 ++L V + ++++ L +ALP T GAH+ + L DG +R YSLC P Sbjct: 1 MKLMVTDIVQDTPTVKIYTLKHLIKSALPRQTAGAHVDVRLPDGKIRQYSLCGNPADDTI 60 Query: 76 YVIAVKRESDSRGGSAFLHEQVQQGDSISASPPVNAFPLIADPRAPLLLAAGIGITPLHA 135 Y IAV+RE RGGS ++HEQV G + + P N FP+ + +A GIGITP + Sbjct: 61 YKIAVRREDSGRGGSRWMHEQVDLGSVLHVTAPRNNFPISPIATRNIFIAGGIGITPFAS 120 Query: 136 MAAEMAAQRRRHRLHYFARSLAHAAFFHELAACSQGMSLHL-GLDGSETERAIAAALAAV 194 M E +L Y RS A A L +LHL +G E R + Sbjct: 121 MVIESKNANVPFQLDYCVRSAADAPLLTFLQQTVVQENLHLWASNGDERRRFDVNEIGPP 180 Query: 195 PSSSPLYVCGPAPFIGAARRHAQLAGWHESDIHFEWFAAPVMANAEPQSAAQAHAEERVF 254 + +Y CGP + A R+ + W ES +HFE F+A + N +P+ F Sbjct: 181 VEGTHIYCCGPGKLVDAVRQATE--SWPESQVHFEVFSATLDENFKPEP----------F 228 Query: 255 ELVLQRSGLRCEVQPGQSIVAAAAQLGVVIGTSCGEGFCGSCESTVLDGQPLHRDSVLSD 314 ++ + +G V QS + A Q G + TSCG G CGSCE +G +HRDS+L+ Sbjct: 229 DIKIASTGNVIRVAANQSALEALHQNGFNVATSCGLGVCGSCECGYSEGVVIHRDSILNV 288 Query: 315 AERASGRRILPCVSR 329 + R R++PCVSR Sbjct: 289 SARQD--RMMPCVSR 301 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.133 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 671,195 Number of extensions: 24308 Number of successful extensions: 103 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 86 Number of HSP's successfully gapped: 7 Length of query: 339 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 255 Effective length of database: 910,473 Effective search space: 232170615 Effective search space used: 232170615 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 130 (54.7 bits)