BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0438.p (565 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 405 e-114 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 405 e-114 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 404 e-114 gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 397 e-112 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 387 e-109 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 272/567 (47%), Positives = 355/567 (62%), Gaps = 33/567 (5%) Query: 3 SAMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETVG 62 S MK+G RL LGF V+ L + + GI +H V + ++E+ + +V D Sbjct: 5 SNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAITK 64 Query: 63 ERSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALPKI 122 + A P A++ + + QKL+ L + +++EK KI Sbjct: 65 ASIARTIGVAKSADPALAQFSAKFAADDSKQSMEIIQKLEPLLN-----TDQEKELYAKI 119 Query: 123 ----QARAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDK-L 177 ++ A E ++ E GK EA A++ +LP +++ LE K + Sbjct: 120 LDVRKSFLAGREGVMKLKTE-GKEAEA---AKYFDTTFLPAADSFKNHFTEFVELERKQM 175 Query: 178 NLEAAESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIA 237 + A+ S R LMLL SA+ + + A +T I R L D A ++AG Sbjct: 176 DAGTAQLSDVEAASTRQLMLL-SAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAG--- 231 Query: 238 EGDLAVVIDTRAGDN-DSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSA 296 GDL I + D L+AA++ M D L IV EVR G++TITTAS+EIA GNLDLS+ Sbjct: 232 -GDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSS 290 Query: 297 RTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMES 356 RTEQQA +LEETASSME+L STVKQNA+NA QAN LA++AS+VA++GG +VSQVV TM S Sbjct: 291 RTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSS 350 Query: 357 INASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASA 416 IN SS+K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSASA Sbjct: 351 INESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASA 410 Query: 417 AKEIKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQV 476 AKEIK LIGDSVGKV+ G+KLV +AG+TM EIV SIRRVTD+M EIT A++EQS+GIEQ+ Sbjct: 411 AKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQI 470 Query: 477 NEAIIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTSSTSASYA 536 N+AI Q+D +TQQNA+LVE+AAAAA +Q+QA L Q+V F++D A Sbjct: 471 NQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLD-------------NA 517 Query: 537 QPASAERVVDVTPGAPELPGANAALAV 563 Q A+ R VT AP+ +A LAV Sbjct: 518 QEANPPRASGVTRLAPKPAAGSAGLAV 544 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 405 bits (1040), Expect = e-114, Method: Compositional matrix adjust. Identities = 271/541 (50%), Positives = 355/541 (65%), Gaps = 38/541 (7%) Query: 5 MKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETV--- 61 +K+ TRL GFA ++ L+V++T GI + +V + + P+ L ++ L V Sbjct: 6 LKISTRLSFGFALLLTLMVMMTVVGILRLQEVGTSADVMTQTMLPKERLAQEWLSAVDVN 65 Query: 62 GERSISLRNLMLPAAPEDVDIEAQ-YIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALP 120 G R++ A+ + E Q + + Q K + A +LQ+ T E+++ Sbjct: 66 GARTL--------ASAKTTSAEDQAFFQKQMDKTSVRANELQKEIESMIKTPEDKRLFEE 117 Query: 121 KIQARAA------TAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALE 174 + AR A T KL +E GK EA L + E+ LP A+ + A+ E Sbjct: 118 LVVARNAYRDIRQTVFKLKAE----GKLPEAQLL---INEKMLPAMNAYSNSIDAVLQNE 170 Query: 175 DKLNLEAAESSAAAY--GRARLLMLLISAI--GVVTAVLAAILITRQILRKLGGEPDYAV 230 KL EA S +A+ GR+ L+ LL +A+ GV A AI ITR + R AV Sbjct: 171 KKLIDEAGTSIQSAFLSGRSLLIGLLAAAVALGVFFAWRLAISITRPLNR--------AV 222 Query: 231 QIAGQIAEGDLAVVIDTRAGD-NDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIAR 289 +A +A GDL+ I+ + D LM A++ M L VSEVR G++TI TAS +IA Sbjct: 223 TVARTVASGDLSAKIEVSSNDETGQLMQALKDMTQSLNKTVSEVRSGTETIATASRQIAS 282 Query: 290 GNLDLSARTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQ 349 GNLDLS+RTE+QA +L ETA+SM QL STV+QNA+NA QAN LA++ASDVAV+GGS+VS+ Sbjct: 283 GNLDLSSRTEEQASSLGETAASMGQLTSTVRQNADNARQANSLAMSASDVAVKGGSVVSE 342 Query: 350 VVATMESINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSL 409 VV TM SIN S++K+ DI+SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+L Sbjct: 343 VVDTMASINESARKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNL 402 Query: 410 AQRSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQ 469 AQRSA+AAKEIK+LIGDSVGKVE GSKLV +AGSTM EIV S++RVTD+M EI A++EQ Sbjct: 403 AQRSAAAAKEIKILIGDSVGKVEAGSKLVNEAGSTMNEIVDSVKRVTDIMAEIMAASQEQ 462 Query: 470 SSGIEQVNEAIIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTS 529 SSGI+QVN+AI Q+D +TQQNAALVE+AAAAA LQ+QA L ++VS F++D Q S Sbjct: 463 SSGIDQVNQAIGQMDQVTQQNAALVEEAAAAAESLQDQAGNLARVVSQFKLDGNQPAFVS 522 Query: 530 S 530 S Sbjct: 523 S 523 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 404 bits (1039), Expect = e-114, Method: Compositional matrix adjust. Identities = 256/559 (45%), Positives = 370/559 (66%), Gaps = 24/559 (4%) Query: 1 MKSAMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLET 60 M + MK+ +L L F V LLV++T + Q+ K + + + P++ L + Sbjct: 3 MIANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIE 62 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALP 120 V + +++LR++ML + P I+ + Q +M+ + L+QL + A T E+ + Sbjct: 63 VNKIALNLRDIMLSSDP--AKIKQLVSDTQASDKKMN-EGLEQLRA-VAQTEEDNRYVSA 118 Query: 121 KIQAR--AATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLN 178 I AR A + + + GK EA +L + ++PVQ + + L A+ + L Sbjct: 119 AIVARDQYVPARDTLLQLAQDGKTAEAKT---YLDQVFMPVQVKYFIALDAMFDYQGSLM 175 Query: 179 LEAAESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAE 238 A ++++A +AR ++ +++ I ++ ++ +TR I R L + AV +A ++A+ Sbjct: 176 NVAGDAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPL----NTAVGVARRVAQ 231 Query: 239 GDLA--VVIDTRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSA 296 GDL+ V + T + LMAA++ M D L IV++VR G+ TI AS EIARGN+DLS+ Sbjct: 232 GDLSGPVFVKT-TNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSS 290 Query: 297 RTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMES 356 RTEQQA +LEETAS+ME+L STV++NA+NA QAN LA +A+ VA QGGS+V +V+ATM + Sbjct: 291 RTEQQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAA 350 Query: 357 INASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASA 416 IN SS+K+ADI VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+A Sbjct: 351 INTSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATA 410 Query: 417 AKEIKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQV 476 A EIK LI DSV KV+NGSKLV+QAG T+ E+VTS+ ++ ++ I++A++EQS+GIEQV Sbjct: 411 AMEIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQV 470 Query: 477 NEAIIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVTSSTSASYA 536 +AI+QID+ TQQNAALVEQ+AAAA+ L+EQA L QLVS+F++D R + +TSA+ Sbjct: 471 GQAIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLD----RQSVATSAA-- 524 Query: 537 QPASAERVVDVTPGAPELP 555 PA A ++ VT LP Sbjct: 525 -PA-AGKLHLVTTSTALLP 541 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 397 bits (1021), Expect = e-112, Method: Compositional matrix adjust. Identities = 247/523 (47%), Positives = 346/523 (66%), Gaps = 10/523 (1%) Query: 3 SAMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLETVG 62 S +K+GTRL +GF V+ L+ +T G+ M +Q R +++ + L++DM E+V Sbjct: 4 SNLKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSESVH 63 Query: 63 ERSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALPKI 122 S S+ L+L ++ +E + + KY + L E E E+ KI Sbjct: 64 IVSHSMGTLVLMRNESEMVLEIKKVVDARSKYDAAI-----LVLEKKPALEVERVLREKI 118 Query: 123 QARAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKLNLEAA 182 + A A + + +EF + + E + L + P+ +AWQ L L+ N A Sbjct: 119 KGAQADARVVNDQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQKHANEADA 178 Query: 183 ESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQIAGQIAEGDLA 242 ++ A Y ++L M +S + ++ ++ A +ITR I R + A+ +A +A GDL Sbjct: 179 VAATATYENSQLYMGALSGVALILGIVIAWVITRSISRPIIS----AMNVANTVALGDLT 234 Query: 243 VVID-TRAGDNDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGNLDLSARTEQQ 301 I+ T A ++ L+ A++ M D L +IV++VR G++TI TAS+EIA GNLDLSARTE+Q Sbjct: 235 SHIEITTADESGQLLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNLDLSARTEEQ 294 Query: 302 AGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVVATMESINASS 361 A +LE+TASSME+L STVK N +NA QAN LAL ASD A +GG +V+QVV TM IN SS Sbjct: 295 ASSLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVETMGFINGSS 354 Query: 362 QKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK 421 +K++DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRS++AAK+I+ Sbjct: 355 RKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSSAAAKDIR 414 Query: 422 VLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSSGIEQVNEAII 481 +LIG SV K++ GS LVE+AG TM EIV S+++VT +M EIT A+ EQS+GIEQVN+AI Sbjct: 415 ILIGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAGIEQVNQAIA 474 Query: 482 QIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQ 524 Q+D +TQQNAALVE+AAAAA L+EQA L ++V VF++D Q Sbjct: 475 QMDQVTQQNAALVEEAAAAAASLREQAENLSKVVRVFKLDNTQ 517 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 387 bits (995), Expect = e-109, Method: Compositional matrix adjust. Identities = 251/557 (45%), Positives = 351/557 (63%), Gaps = 33/557 (5%) Query: 1 MKSAMKVGTRLGLGFAWVVLLLVLVTGFGIFNMHQVQGRFKHVVEVKNPESALVKDMLET 60 M + MKVG++L LGF LL +L+ F + ++Q+ G E++ + + E Sbjct: 1 MFANMKVGSKLSLGFGVTALLTLLIAVFALMRINQIDGVIATQNEIRTQQLERLYTAREA 60 Query: 61 VGERSISLRNLMLPAAPEDVDIEAQYIEAQTLKYRMSAQKLQQLFSESADTSEEEKAALP 120 +G+ ++ RN + D E ++ Q Y + K+ F A+ + K L Sbjct: 61 LGQTGLAARNAYIFTNKADALKELDILDEQKAIYLDALAKMTPFFKGDANFEKVSKGLL- 119 Query: 121 KIQARAATAEKLISEAVEFGKRREAYELAQFLKEQYLPVQKAWQVELKALAALEDKL--- 177 AE+L +F + +FL + P+++ ++ + K+ Sbjct: 120 ------TMAEEL-KRPRQFRDADQMEAFGKFLVNECSPLRRQIVADIGTVVTSMQKIVDV 172 Query: 178 -----NLEAAESSAAAYGRARLLMLLISAIGVVTAVLAAILITRQILRKLGGEPDYAVQI 232 NL A +S + + +LL +G+V I+R I R L + AV + Sbjct: 173 KSQEANLAAQQSITIIIAISAVALLLSIGLGIV--------ISRSITRPL----NEAVLV 220 Query: 233 AGQIAEGDLAVVIDTRAGD-NDSLMAAMRVMRDKLAAIVSEVRRGSDTITTASSEIARGN 291 A +A GDL I+ ++ D L+ A++ M L IV EVR G+ T+ TAS++IA GN Sbjct: 221 AQTVASGDLTSQINVKSKDETGQLLQALKDMNQSLIGIVDEVRSGTATMATASNQIASGN 280 Query: 292 LDLSARTEQQAGALEETASSMEQLNSTVKQNAENAHQANDLALAASDVAVQGGSIVSQVV 351 +DLS+RTE+QA +LEETASSME+L STVKQNA+NA QAN L+L+AS++AV+GG +VS+VV Sbjct: 281 MDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANSLSLSASEIAVKGGQVVSEVV 340 Query: 352 ATMESINASSQKVADIVSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQ 411 TM IN S++K+ DI+ VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQ Sbjct: 341 VTMNGINDSAKKITDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQ 400 Query: 412 RSASAAKEIKVLIGDSVGKVENGSKLVEQAGSTMTEIVTSIRRVTDVMTEITHANREQSS 471 RSA+AAKEIK LI DSVG+V+ GSKLV QAGSTMTE+V S++RVTD+M EI A++EQS+ Sbjct: 401 RSAAAAKEIKALIDDSVGRVDTGSKLVVQAGSTMTEVVDSVKRVTDIMAEIMAASQEQSA 460 Query: 472 GIEQVNEAIIQIDDMTQQNAALVEQAAAAARQLQEQAAGLQQLVSVFRIDAAQARVT--- 528 GIEQVN+AI Q+D +TQQNAALVE+AAAAA L++QA L+Q VSVF+IDA+ + T Sbjct: 461 GIEQVNQAIAQMDHVTQQNAALVEEAAAAAGSLKDQAVKLEQTVSVFKIDASAPQQTEHQ 520 Query: 529 -SSTSASYAQPASAERV 544 +S ++ +PA A ++ Sbjct: 521 DTSVRSTPVRPALASKL 537 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 917,603 Number of extensions: 29619 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 21 Length of query: 565 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 477 Effective length of database: 895,685 Effective search space: 427241745 Effective search space used: 427241745 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)