BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0437.p (921 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacte... 1462 0.0 gi|152981478|ref|YP_001351852.1| 5'-3' exonuclease [Janthinobact... 140 3e-34 >gi|152980489|ref|YP_001352013.1| DNA polymerase I [Janthinobacterium sp. Marseille] Length = 912 Score = 1462 bits (3784), Expect = 0.0, Method: Compositional matrix adjust. Identities = 707/920 (76%), Positives = 805/920 (87%), Gaps = 12/920 (1%) Query: 6 LLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYP-ASYVACVFDAKGKT 64 +LVDGSSYLYRAFHA+PD+R GAPTGA+YG+INMLRRLR DYP A Y+ACVFDAKGKT Sbjct: 1 MLVDGSSYLYRAFHAMPDLRGPNGAPTGAIYGMINMLRRLRKDYPDAEYMACVFDAKGKT 60 Query: 65 FRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQATSA 124 FRDDLY +YKA R SMP+DL QIEPIH AVRA+GWPILMVEGIEADDVIGTL+V+A Sbjct: 61 FRDDLYAEYKAQRASMPDDLVKQIEPIHEAVRAMGWPILMVEGIEADDVIGTLAVEAVKH 120 Query: 125 GLDTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTVD 184 G+DT++STGDKD+AQLVN+ V L+NTMSNE LD GV AKFGVPPERI+DYL+LIGDTVD Sbjct: 121 GMDTVISTGDKDLAQLVNDRVMLINTMSNEKLDRDGVIAKFGVPPERIIDYLTLIGDTVD 180 Query: 185 NVPGVEKCGPKTAVKWLTAYGSLDGVMANADKITGVVGENLRRALDWLPQGRVLVTVKTD 244 NVPGV+K GPKTAVKWLT YG+LDG++ +A I G VG+NLRRALDWLPQ + L+TVKTD Sbjct: 181 NVPGVDKVGPKTAVKWLTQYGTLDGIVEHAADIKGAVGDNLRRALDWLPQAKTLITVKTD 240 Query: 245 CDLSEHMKSILESLTMQPQDKEVLKELFTRYNFRTWLRELSEGADAAAGAKAPMVGAAAA 304 CDLS HM +I+ESLT +P+DK+ + + FTR F+TWLRELS+ K AAAA Sbjct: 241 CDLSGHMDTIVESLTQRPEDKDAMIDFFTRNGFKTWLRELSD--------KPEAADAAAA 292 Query: 305 AALETPAQGGLFAA-APKVE--YETVLTDAQLDQWIAAINAAELTAVDTETTSLEAMQAE 361 A + QG LFA AP+VE YET+LT+A+L++W+ I++A LT++DTETTSL MQA+ Sbjct: 293 PAADAAPQGALFADDAPEVEKHYETILTEAELERWLQKIDSAVLTSIDTETTSLIPMQAQ 352 Query: 362 LVGISLCCEPGRAAYIPVAHNYQDAPAQLSREHVLDKLKPWLEDASKPKLGQHLKYDSHI 421 LVGISLCCEPG AAYIPVAH+YQD P QLSRE VL+K+KPWLEDASK K+GQ+LKYDSHI Sbjct: 353 LVGISLCCEPGVAAYIPVAHHYQDVPQQLSRELVLEKMKPWLEDASKAKVGQNLKYDSHI 412 Query: 422 FANYGVRLAGVKHDTLLESYVFESHRPHDMDSLAARHLERKTITYAEVCGKGASQIGFNE 481 FAN+GV L G+ HDTLLESYVFESHR HDMDSLA RHL RKTIT+ EVCGKGASQIGF + Sbjct: 413 FANHGVNLRGIVHDTLLESYVFESHRSHDMDSLALRHLNRKTITFQEVCGKGASQIGFEQ 472 Query: 482 VPIERATEYAAEDAEVTLALHQAMWPQIEHDDKLRFIYEKIEVPTSVVLQKIERNGVLID 541 V I RATEYAAEDA++TL LHQ MWP + D+ L F+YEKIE+PT+VVLQKIERNGVLID Sbjct: 473 VEIGRATEYAAEDADITLQLHQRMWPNVAEDNGLTFVYEKIELPTAVVLQKIERNGVLID 532 Query: 542 SERLGQQSHDLGKRMLEIEQQAYDLAGQPFNLNSPKQLGEILFGKLELPVVKKTASGAPS 601 + L +QS++LGKRMLEIEQ AY+LA QPFNLNSPKQ+GEI F KL+LPVVKKT SG+PS Sbjct: 533 PDLLAKQSNELGKRMLEIEQNAYELAEQPFNLNSPKQIGEIFFEKLKLPVVKKTPSGSPS 592 Query: 602 TDEEVLQKLAEDYPLPKVLLDYRGLSKLKSTYTDKLPKMINPATGRVHTNYAQAVAVTGR 661 TDEEVLQKLAEDYPLPKVLL+YRGLSKLKSTYTDKLPKMI+P TGRVHTNYAQAVAVTGR Sbjct: 593 TDEEVLQKLAEDYPLPKVLLEYRGLSKLKSTYTDKLPKMIDPTTGRVHTNYAQAVAVTGR 652 Query: 662 LASNDPNLQNIPIRTAEGRRIREAFVAPEGSVIVSADYSQIELRIMAHISEDENMLKAFA 721 LASNDPNLQNIPIR AEGRRIREAF+A G+VIVSADYSQIELRIMAHIS DENML+AFA Sbjct: 653 LASNDPNLQNIPIRNAEGRRIREAFIAAPGNVIVSADYSQIELRIMAHISGDENMLQAFA 712 Query: 722 NNEDIHKATAAEIFGIAPEQVESEQRRYAKVINFGLIYGMSAFGLAGNLGIERAAAQMYI 781 + EDIH+ATAAEIFG+ V+SEQRRYAKVINFGLIYGMSAFGLAGNLGIER+AAQ YI Sbjct: 713 DGEDIHRATAAEIFGVERRAVDSEQRRYAKVINFGLIYGMSAFGLAGNLGIERSAAQSYI 772 Query: 782 DKYFMRFSGVKRYMDETRMQAKAHGYVETVFGRRLWLPEINSPNGPRRQGAERAAINAPM 841 ++YF RF+GVKRYMDETR++AKA GYV+TVFGRRLWLPEINSPNGPRRQGAERAAINAPM Sbjct: 773 ERYFHRFAGVKRYMDETRLEAKARGYVQTVFGRRLWLPEINSPNGPRRQGAERAAINAPM 832 Query: 842 QGTAADLIKLAMIAVQGWLEQAGLQTRMIMQVHDELVLEVPQQELDLVREKLPELMKNVA 901 QGTAADLIKLAMIAVQGWLE LQ++MIMQVHDELVLEVP+ EL LVREKLPELM++VA Sbjct: 833 QGTAADLIKLAMIAVQGWLETEKLQSKMIMQVHDELVLEVPETELPLVREKLPELMRHVA 892 Query: 902 ELKVPLLAEVGIGKNWDQAH 921 +LKVPL+AEVG+G NWD+AH Sbjct: 893 QLKVPLIAEVGVGNNWDKAH 912 >gi|152981478|ref|YP_001351852.1| 5'-3' exonuclease [Janthinobacterium sp. Marseille] Length = 261 Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 130/242 (53%), Gaps = 2/242 (0%) Query: 5 LLLVDGSSYLYRAFHALPDMRNAEGAPTGALYGIINMLRRLRNDYPASYVACVFDAKGKT 64 LL +DG + + R + A + A A AL + R+L N + ++V FD G T Sbjct: 4 LLAIDGLNIVRRVYEANMEEDTAAKA-DAALRHSLASFRKLLNTHLPTHVLPAFDFGGHT 62 Query: 65 FRDDLYPDYKATRKSMPEDLALQIEPIHAAVRALGWPILMVEGIEADDVIGTLSVQATSA 124 +R DLYP Y+ R MPE L ++ + + LG ++ V +EADDVI T ++ Sbjct: 63 WRHDLYPRYRENRAPMPEVLRERLPDFYVQLTELGLHVVSVPEVEADDVIATGVLRWLGE 122 Query: 125 GL-DTIVSTGDKDMAQLVNEHVTLVNTMSNEVLDIAGVTAKFGVPPERIVDYLSLIGDTV 183 G + I+++ DKD+ L+ + + E D V +KFGV PE + D L+L+GD Sbjct: 123 GRGEAIIASTDKDLHTLIEHGAVIWDHFKGEWHDSKWVESKFGVSPEMLTDLLALMGDVS 182 Query: 184 DNVPGVEKCGPKTAVKWLTAYGSLDGVMANADKITGVVGENLRRALDWLPQGRVLVTVKT 243 D++PGV K G KTA K L +YG++D +MA A + +GE LR+ D L R LV +K Sbjct: 183 DSIPGVSKVGVKTAAKLLQSYGNIDRIMAGAGILKDTLGEKLRKDKDQLYMSRQLVALKD 242 Query: 244 DC 245 D Sbjct: 243 DV 244 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.317 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,073,645 Number of extensions: 86080 Number of successful extensions: 276 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 2 Length of query: 921 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 829 Effective length of database: 880,897 Effective search space: 730263613 Effective search space used: 730263613 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)