BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0434.p
         (145 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982520|ref|YP_001352012.1| hypothetical protein mma_0322 [...    77   3e-16

>gi|152982520|ref|YP_001352012.1| hypothetical protein mma_0322
           [Janthinobacterium sp. Marseille]
          Length = 135

 Score = 77.4 bits (189), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 13/127 (10%)

Query: 1   MKPSNVWFQQSLAAALLCVSAGLAAPLAVAQPAPPGLAAQPAPPPPELEKLEEGEPPAVT 60
           M+ S +W   ++ AA+       A P+ V+    PG     APPPP++++LEEG  P VT
Sbjct: 1   MRTSKIWSLITITAAVF------ATPMLVSAQNAPGNDV--APPPPQMQRLEEGAAPEVT 52

Query: 61  IRKPGEDGRNQGNSIKERRDHGQTKEIEVKSGPSTYYIRPNPQLGGSTPGDAQSPPPSSA 120
           IR+P     +    I E++  G+  E++V++G +TYY  PN   G +  GD QS      
Sbjct: 53  IRQP-----DTQKKITEKKSQGRVTEVKVQTGRTTYYAYPNDPAGSAMRGDGQSDSSRPV 107

Query: 121 QWKVGEF 127
           Q+++GEF
Sbjct: 108 QFQIGEF 114


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.307    0.130    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 300,803
Number of extensions: 10314
Number of successful extensions: 19
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 145
Length of database: 1,221,021
Length adjustment: 75
Effective length of query: 70
Effective length of database: 943,746
Effective search space: 66062220
Effective search space used: 66062220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 125 (52.8 bits)