BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0433.p
         (330 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979890|ref|YP_001352011.1| homoserine kinase [Janthinobact...   457   e-130

>gi|152979890|ref|YP_001352011.1| homoserine kinase
           [Janthinobacterium sp. Marseille]
          Length = 322

 Score =  457 bits (1177), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/317 (67%), Positives = 255/317 (80%)

Query: 14  MAVFTPVSLEQLSDWIEQFPLGRATSIKGISSGIENSNFFIDTERGEYVLTLFEKLHIEQ 73
           MAVFTPV+L+ LS WI QF LG+A +IKGI SGIEN+NFFI TE GEYVLT+FE L  EQ
Sbjct: 1   MAVFTPVTLDDLSQWITQFDLGKALAIKGIPSGIENTNFFITTEFGEYVLTIFENLSFEQ 60

Query: 74  LPFYLELMRHLAQRGIPVPEPVANDKGAIVNLLNDKPAAIVSKLEGQSQLDPQPVHCAAL 133
           LPFYL LMRHLA+RG+ VP P+A  +G ++N L+ KPAAIVSKLEG SQ++PQ VHCAA+
Sbjct: 61  LPFYLNLMRHLAERGVLVPAPIATHQGNLINALHGKPAAIVSKLEGSSQMEPQAVHCAAV 120

Query: 134 GDMLARMHLAGKDFKILQPNLRGLAWWLETTPAVLPFLPPELGRLLADEVQYQKDFAATS 193
           G MLARMH+A ++F I QPNLRGLAW  ET P V+P+L     +LLA+E+ +Q  FA + 
Sbjct: 121 GAMLARMHIAAENFPIRQPNLRGLAWRNETAPIVMPYLSDSNKQLLAEEMAFQNAFAESD 180

Query: 194 DYRALPRGPVHADLFRNNAMFVGEQLSGIFDFYFAGVDTWLFDLAVTVNDWCVELDTGVL 253
            Y  L  GP+HADLFRNN MF G+ L+G FDFYFAG DTWLFD+AVTVNDWC++++TGVL
Sbjct: 181 TYHQLQNGPIHADLFRNNVMFSGDHLTGFFDFYFAGCDTWLFDVAVTVNDWCIDVETGVL 240

Query: 254 DTSRSQAMLEAYRAVRPFSDAERVAWQPMLRAAALRFWLSRLYDFYLPREAEMLTPHDPT 313
           D  R +AML+AY  VRPF+ AE+ AWQ MLRA ALRFWLSRLYDF+LPR+AEMLTPHDP 
Sbjct: 241 DQERVRAMLDAYHHVRPFTAAEQAAWQTMLRAGALRFWLSRLYDFHLPRDAEMLTPHDPG 300

Query: 314 HFERILRLRINQAPPAL 330
           HFERILRLRI QA P L
Sbjct: 301 HFERILRLRIEQATPPL 317


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 801,335
Number of extensions: 34222
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 86
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 246
Effective length of database: 910,473
Effective search space: 223976358
Effective search space used: 223976358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)