BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0431.p (518 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981373|ref|YP_001352217.1| aerotaxis sensor receptor (chem... 597 e-172 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 342 4e-95 gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (... 332 4e-92 gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis tra... 328 4e-91 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 323 2e-89 >gi|152981373|ref|YP_001352217.1| aerotaxis sensor receptor (chemotaxis transducer) transmembrane protein [Janthinobacterium sp. Marseille] Length = 555 Score = 597 bits (1540), Expect = e-172, Method: Compositional matrix adjust. Identities = 313/521 (60%), Positives = 392/521 (75%), Gaps = 6/521 (1%) Query: 2 NMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEEEELLGAPQNLIRHPDMPA 61 N+PVT E L DG ++VSKTD KG ITYVNP F+E SGF+EEEL+G P NLIRHPDMP Sbjct: 4 NLPVTSNEYFLQDGSSLVSKTDTKGRITYVNPAFMEASGFQEEELIGKPHNLIRHPDMPE 63 Query: 62 EAFGDMWATIKAGLPWTGLVKNRSKNGDHYWVRANVTPIRESGQVVGYMSVRTKPERAAV 121 EAFGDMW T+K GLPWTGLVKNR KNGD YWV ANVTP+RE+ ++V +MSVR+KP R V Sbjct: 64 EAFGDMWQTLKEGLPWTGLVKNRRKNGDFYWVNANVTPVRENNEIVAFMSVRSKPNREQV 123 Query: 122 EAAEKLYASIRRGQAKGIALHRGEVVRTGVAGWLGKLSRMQLNTRLNLSMGVMLAIQIAV 181 E A+ +YA + QAKG+A+ RG VV TG+ G L L + L +++ L M ++A+ A+ Sbjct: 124 EGADAIYARFKADQAKGLAIRRGAVVSTGIFGKLAALRDIGLGSKIALGMMTLIALIAAL 183 Query: 182 VVAGMVTLHQ-----WWISALAAVSALISIVQWIALRAALIKPLHQALDITHAITGGDLS 236 + W+ A AA ++++ W +L A++++PL + T I GGDL+ Sbjct: 184 GFVATTAVENAARMGWYAGATAA-GVCVALLLWASLHASVVRPLRTLIAETRVIAGGDLT 242 Query: 237 VRIESGRHDELGRLLASLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQ 296 RHD++G+L +L+QMNVNL +++GD+R+NV++IT+ATREIA+GN+DLS RTE+Q Sbjct: 243 FDFAVDRHDDMGQLQQALQQMNVNLRSVMGDIRTNVDSITIATREIAAGNMDLSGRTESQ 302 Query: 297 AANLEETASSMHQLASTVRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSS 356 A++LEETASSM Q ASTV+QNAD A QAN+L +AS +A +GG V G TM+EIS S+ Sbjct: 303 ASSLEETASSMEQFASTVKQNADSASQANELVQSASEVAGKGGAVVEKVGATMDEISASA 362 Query: 357 NKIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK 416 KIVDIISLID IAFQTNILALNAAVEAARAGEQG+GFAVVASEVRSLAQRSA+AAKEIK Sbjct: 363 KKIVDIISLIDGIAFQTNILALNAAVEAARAGEQGKGFAVVASEVRSLAQRSASAAKEIK 422 Query: 417 LLIDDSVAKVEVGNRQVEQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAIT 476 LIDDSV KV+ GNR V A TM DIV SVQRV+GIM EI A+++QS GI+QV+ AI+ Sbjct: 423 GLIDDSVEKVDAGNRLVSDAMTTMDDIVSSVQRVTGIMNEITVASREQSNGIDQVNLAIS 482 Query: 477 QMDASTQQNASLVEEAAGAAGSLQEQTVRLLQAISVFKFNR 517 QMD TQQNA+LVEEAA AA SL+EQT L Q+ISVF+ R Sbjct: 483 QMDEVTQQNAALVEEAAAAAASLEEQTFHLTQSISVFRTGR 523 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 342 bits (876), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 189/305 (61%), Positives = 236/305 (77%) Query: 212 LRAALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLASLRQMNVNLTAIIGDVRSN 271 L + +PL A+D + GGDL+ I++ DE G+LLA+L+ MN L I+G+VR Sbjct: 211 LTIGITRPLKTAVDAARRVAGGDLTNDIKAESKDECGQLLAALKDMNDGLQRIVGEVRLG 270 Query: 272 VETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLASTVRQNADHAVQANDLAGTA 331 ETIT A+ EIA+GNLDLS RTE QA++LEETASSM +L STV+QNAD+A QAN LA +A Sbjct: 271 TETITTASNEIAAGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNARQANQLAVSA 330 Query: 332 SSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQTNILALNAAVEAARAGEQG 391 S +A++GGD V+ TM+ I++SS KIVDIIS+ID IAFQTNILALNAAVEAARAGEQG Sbjct: 331 SEVALKGGDVVSQVVQTMSSINESSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQG 390 Query: 392 RGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQVEQATRTMRDIVESVQRVS 451 RGFAVVA+EVRSLAQRSA+AAKEIK LI DSV KV+ GN+ V +A TM +IV S++RV+ Sbjct: 391 RGFAVVATEVRSLAQRSASAAKEIKALIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVT 450 Query: 452 GIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAGAAGSLQEQTVRLLQAIS 511 IMGEI A+Q+QSAGI Q+++AI QMD TQQNASLVEEAA AA S+Q+Q +L Q + Sbjct: 451 DIMGEITAASQEQSAGIEQINQAIGQMDHVTQQNASLVEEAAAAAESMQDQARKLGQVVG 510 Query: 512 VFKFN 516 FK + Sbjct: 511 AFKLD 515 >gi|152982139|ref|YP_001353025.1| methyl-accepting chemotaxis I (serine chemoreceptor protein) transmembrane protein [Janthinobacterium sp. Marseille] Length = 560 Score = 332 bits (851), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 187/317 (58%), Positives = 243/317 (76%) Query: 200 VSALISIVQWIALRAALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLASLRQMNV 259 V+ L+SI I + ++ +PL++A+ + + GDL+ +I DE G+LL +L+ MN Sbjct: 194 VALLLSIGLGIVISRSITRPLNEAVLVAQTVASGDLTSQINVKSKDETGQLLQALKDMNQ 253 Query: 260 NLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLASTVRQNAD 319 +L I+ +VRS T+ A+ +IASGN+DLS RTE QA++LEETASSM +L STV+QNAD Sbjct: 254 SLIGIVDEVRSGTATMATASNQIASGNMDLSSRTEEQASSLEETASSMEELTSTVKQNAD 313 Query: 320 HAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQTNILALN 379 +A QAN L+ +AS IA++GG V+ TMN I+ S+ KI DII +ID IAFQTNILALN Sbjct: 314 NARQANSLSLSASEIAVKGGQVVSEVVVTMNGINDSAKKITDIIGVIDGIAFQTNILALN 373 Query: 380 AAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQVEQATRT 439 AAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LIDDSV +V+ G++ V QA T Sbjct: 374 AAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKALIDDSVGRVDTGSKLVVQAGST 433 Query: 440 MRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAAGAAGSL 499 M ++V+SV+RV+ IM EI A+Q+QSAGI QV++AI QMD TQQNA+LVEEAA AAGSL Sbjct: 434 MTEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIAQMDHVTQQNAALVEEAAAAAGSL 493 Query: 500 QEQTVRLLQAISVFKFN 516 ++Q V+L Q +SVFK + Sbjct: 494 KDQAVKLEQTVSVFKID 510 >gi|152980904|ref|YP_001351851.1| methyl-accepting chemotaxis transducer transmembrane protein [Janthinobacterium sp. Marseille] Length = 568 Score = 328 bits (841), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 191/323 (59%), Positives = 243/323 (75%), Gaps = 1/323 (0%) Query: 194 ISALAAVSALISIVQWIALRAALIKPLHQALDITHAITGGDLSVRIESGRHDELGRLLAS 253 I LAA AL W L ++ +PL++A+ + + GDLS +IE +DE G+L+ + Sbjct: 193 IGLLAAAVALGVFFAW-RLAISITRPLNRAVTVARTVASGDLSAKIEVSSNDETGQLMQA 251 Query: 254 LRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETASSMHQLAST 313 L+ M +L + +VRS ETI A+R+IASGNLDLS RTE QA++L ETA+SM QL ST Sbjct: 252 LKDMTQSLNKTVSEVRSGTETIATASRQIASGNLDLSSRTEEQASSLGETAASMGQLTST 311 Query: 314 VRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISLIDSIAFQT 373 VRQNAD+A QAN LA +AS +A++GG V+ TM I++S+ KIVDIIS+ID IAFQT Sbjct: 312 VRQNADNARQANSLAMSASDVAVKGGSVVSEVVDTMASINESARKIVDIISVIDGIAFQT 371 Query: 374 NILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAKVEVGNRQV 433 NILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK+LI DSV KVE G++ V Sbjct: 372 NILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKILIGDSVGKVEAGSKLV 431 Query: 434 EQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQNASLVEEAA 493 +A TM +IV+SV+RV+ IM EI A+Q+QS+GI+QV++AI QMD TQQNA+LVEEAA Sbjct: 432 NEAGSTMNEIVDSVKRVTDIMAEIMAASQEQSSGIDQVNQAIGQMDQVTQQNAALVEEAA 491 Query: 494 GAAGSLQEQTVRLLQAISVFKFN 516 AA SLQ+Q L + +S FK + Sbjct: 492 AAAESLQDQAGNLARVVSQFKLD 514 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 323 bits (827), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 207/391 (52%), Positives = 266/391 (68%), Gaps = 10/391 (2%) Query: 126 KLYASIRRGQAKGIALHRGEVVRTGVAGWLGKLSRMQLNTRLNLSMGVMLAIQIAVVVAG 185 KL A R +A+ I L V G + +L+ +Q ++ G A I + Sbjct: 134 KLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQ--KKMVEERGATAAGHIDAAIQM 191 Query: 186 MVTLHQWWISALAAVSALISIVQWIALRAALIKPLHQALDITHAITGGDLSVRIESGRHD 245 M+ L ALAAV I++ WI ++ KPLH+A+ I + GDL+ IE+ D Sbjct: 192 MMVL-----GALAAVGG-IALAYWIT--HSITKPLHEAVKIAQTVAAGDLTSVIEAKYKD 243 Query: 246 ELGRLLASLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQAANLEETAS 305 E G+LL +L+ MN +L I+G+VR + E I +A+ +IASGN+DLS RTE QA++LEETAS Sbjct: 244 ETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSRTEEQASSLEETAS 303 Query: 306 SMHQLASTVRQNADHAVQANDLAGTASSIAMRGGDAVASTGTTMNEISQSSNKIVDIISL 365 SM +L TVRQNAD+A QAN LA TASS+A +GGD V+ TM I+ S+ KI DII + Sbjct: 304 SMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSINDSAKKIADIIGV 363 Query: 366 IDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKLLIDDSVAK 425 ID IAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSAAAAKEIK LI DSV K Sbjct: 364 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIGDSVQK 423 Query: 426 VEVGNRQVEQATRTMRDIVESVQRVSGIMGEIKEATQQQSAGINQVHEAITQMDASTQQN 485 V G+R V+ A TM+++V SV+RV+ IMGEI A+Q+Q+ GI Q+++A+ QMD+ TQQN Sbjct: 424 VNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQINQAVIQMDSVTQQN 483 Query: 486 ASLVEEAAGAAGSLQEQTVRLLQAISVFKFN 516 A+LVE+AA AA SLQ Q L Q + VFK + Sbjct: 484 AALVEQAAAAAASLQHQAGSLAQVVGVFKLH 514 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.316 0.128 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 998,747 Number of extensions: 37529 Number of successful extensions: 265 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 200 Number of HSP's successfully gapped: 21 Length of query: 518 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 431 Effective length of database: 899,382 Effective search space: 387633642 Effective search space used: 387633642 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)