BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0430.p
         (490 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacter...   122   7e-29

>gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  122 bits (305), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 202/460 (43%), Gaps = 37/460 (8%)

Query: 3   LGIDLGTSEVKAVVIDDQGDLLALAGSTLNVTRAHPRWSEQAPADWWQATCDTVDKLRTQ 62
           L ID GT+  +A++ + +G +  +A          P W E      W +      ++  +
Sbjct: 6   LAIDQGTTSSRAILFNHEGQIHGVAQQEYPQIFPEPGWVEHDANAIWNSQLAVARQVLKE 65

Query: 63  LGRERFAGIRAIGLSGQMHGAVLLD-EDDEVLRPAILWSDSRSAPECAEL--DRRAPRLH 119
             +     I AIG++ Q    V+ D +  + +  AI+W D R+A  C +L  + +A    
Sbjct: 66  -NKLSATDIAAIGITNQRETTVIWDRKTGQPIANAIVWQDRRTAAYCDQLRAEGKADLFQ 124

Query: 120 GIAGNLAMPGFTAPKLLWVARHEPQLFARIATVLLP----KDWLRLKMTGRKVSDPSDAA 175
              G +    F+  K+ W+  H P   AR     L       WL  K++G  ++D S+A+
Sbjct: 125 QKTGLVLDSYFSGTKVKWLLDHIPDARARAERGELAFGTIDSWLVYKLSGAHLTDSSNAS 184

Query: 176 GTLWLDVEGRNWSDELLAASGMRREQMPALVDGSAVSGTLLPDVARAWGLGENVIVAGGA 235
            TL  ++    W +ELLA   +    +PA+V  S ++     ++      G  + +AG A
Sbjct: 185 RTLLFNIHTLQWDEELLAIFDIPASLLPAVVASSGIASHTHTEL-----FGAPIAIAGIA 239

Query: 236 GDGAASAVGIGAVNPGDGFLSLGTSGVLFVVNDRFRPNPGRAIHAFCHTLPQ-------- 287
           GD  A+  G     PG    + GT G   ++N         AI +  + L          
Sbjct: 240 GDQQAATFGQACHKPGMAKNTYGT-GCFMLLN-----TGTHAISSHNNLLTTIGWTLGIG 293

Query: 288 RWHQMSVMLS-----AASCLRWFCRLCSVDEKSLLAEIAELDHEARSN-APLFLPYLSGE 341
           +  Q + ML        + ++W      + ++S  A++  L      N   +F+P  SG 
Sbjct: 294 KAAQTNYMLEGGVFMGGAIVQWLRDGLGIIQRS--ADVEALATSVPDNGGVVFVPAFSGL 351

Query: 342 RTPHNDPYATGVFHGLTPEHQRAALGYAVLEGVAFGMVDGLDALRA-AGTDVAELSLVGG 400
             P+ D YA G   G+T    +A +  A LE +A+  VD LDA++  A +   EL + GG
Sbjct: 352 GAPYWDSYARGTILGMTRGSNKAHIARAALESIAYQSVDLLDAMQKDAQSSSQELRVDGG 411

Query: 401 GARSAYWAQLLADALAVRIVTHVGSEAGGALGAARLAWLA 440
            +R+    Q  AD L V ++  V +E   ALGAA LA LA
Sbjct: 412 ASRNDLLMQFQADILNVPVIRPVVTET-TALGAAYLAGLA 450


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,180,725
Number of extensions: 48823
Number of successful extensions: 159
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 2
Length of query: 490
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 403
Effective length of database: 899,382
Effective search space: 362450946
Effective search space used: 362450946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)