BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0428.p (372 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 250 9e-68 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 216 2e-57 gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport sy... 172 4e-44 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 147 1e-36 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 145 4e-36 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 250 bits (639), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 128/291 (43%), Positives = 184/291 (63%), Gaps = 3/291 (1%) Query: 1 MAAVSIRNLAKRYDDNEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDL 60 MA + IRNL +R+ DN V+ +I+L IE GEF +GPSGCGK+TLLRMIAG + G + Sbjct: 1 MALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQI 60 Query: 61 DIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKI 120 + + VP +R V VFQ+YAL+PHM++ N+AF L++A KAEI V A + Sbjct: 61 LLDGVDLTGVPPEQRPVRTVFQNYALFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALED 120 Query: 121 LHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLH 180 + + R P LSGGQRQRV+I RA+ +P + L DEPLS LDA LR +M++E L Sbjct: 121 VRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQ 180 Query: 181 DDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPKMN 240 ++ T IYVTHDQ EA+ L+ +I V+++G++EQ+ P ++Y +P +RFVA FIG+ N Sbjct: 181 KEVGITFIYVTHDQAEALALSHRIAVMNKGQVEQLDEPTRIYSYPRSRFVADFIGT--CN 238 Query: 241 FIDGAVAAIQADGVQVQLPGGGLQWAAVDGGALQVGQKVTLGVRPEHLNIA 291 DG V I + + + +PG G A ++ VG K T+ +RPE ++ Sbjct: 239 LFDGVVTQIDGNMMWLDVPGMG-AVKAFTAPSVTVGSKGTIALRPEKTQVS 288 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 216 bits (550), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 105/263 (39%), Positives = 171/263 (65%), Gaps = 8/263 (3%) Query: 3 AVSIRNLAKRYDDNEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDI 62 ++ ++N+ K++ + + +++LD GE +GPSGCGK+TLLR+IAGLE+ G + + Sbjct: 2 SIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLL 61 Query: 63 GARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKI----AGKSKAEIDAAVQHAA 118 + +R V VFQ YAL+ HM++++N+AFGL++ S+++I V Sbjct: 62 DGEDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQIKEKVTKLL 121 Query: 119 KILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAK 178 +++ +D L DR P LSGGQRQR+A+ RA+ +P V L DEP LDA +R ++R + Sbjct: 122 ELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRR 181 Query: 179 LHDDLKTTMIYVTHDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIGSPK 238 LHDDL T I+VTHDQ EA+ +AD+IV++++G +EQ+G+P+ +Y++PA+ FV GF+G+ Sbjct: 182 LHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGFLGN-- 239 Query: 239 MNFIDGAV--AAIQADGVQVQLP 259 +N G V +Q+ G+ + P Sbjct: 240 VNLFHGRVHEGILQSSGIAFEAP 262 >gi|152982367|ref|YP_001352417.1| iron(III) ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 363 Score = 172 bits (435), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 137/225 (60%), Gaps = 8/225 (3%) Query: 16 NEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRMND-----V 70 +E++ ++ ++ GE +G SGCGK+T+LR IAG E + G + +G + +++ V Sbjct: 27 HEIVHSLSFALQRGEIGCLLGQSGCGKTTVLRAIAGFESLIAGRITLGGKELSNAQHTTV 86 Query: 71 PASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQHAAKILHIDHLLDRK 130 P + R V +VFQ YAL+PH+S+ DN+ FGL+ + AE + + ++ + + Sbjct: 87 PEA-RHVGVVFQDYALFPHLSVSDNIGFGLR--KLAAAERNGRINKLLALVGLQAQEKKF 143 Query: 131 PRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIYV 190 P LSGGQ+QRVA+ RA+ QP + L DEP SNLD LR ++ E + ++ TT + V Sbjct: 144 PHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLV 203 Query: 191 THDQIEAMTLADKIVVLSEGRIEQVGSPQQLYHHPANRFVAGFIG 235 THDQ EA +AD+I V+ +G I Q LYH PANRFVA FIG Sbjct: 204 THDQHEAFAIADQIGVMQDGVIVQWDQAYNLYHRPANRFVADFIG 248 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 147 bits (370), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 130/220 (59%), Gaps = 9/220 (4%) Query: 1 MAAVSIRNLAKRYD----DNEVMRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEIS 56 + A+ I+ ++K + + +R++NL I GEFV +G SGCGKSTLLR++AG E S Sbjct: 11 LPAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTS 70 Query: 57 DGDLDIGARRMNDVPASKRGVAMVFQSYALYPHMSLYDNMAFGLKIAGKSKAEIDAAVQH 116 G ++ + D P+ +RG MVFQ Y L+P +++ +N+ FG + KA+++ + Sbjct: 71 SGSANMYGMPI-DGPSPERG--MVFQDYGLFPWLTVKENIGFGQRQRNLPKAKLEELSAY 127 Query: 117 AAKILHIDHLLDRKPRALSGGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEF 176 ++ + + P LSGG +QRVAI R + V L DEP LDA R K++ + Sbjct: 128 YTDMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDL 187 Query: 177 AKLHDDLKTTMIYVTHDQIEAMTLADKIVVLSE--GRIEQ 214 ++ + K T+++VTH EA+ L+D++VV++ GRIE+ Sbjct: 188 LEIWERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEE 227 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 145 bits (366), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 6/201 (2%) Query: 19 MRDINLDIEDGEFVVFVGPSGCGKSTLLRMIAGLEEISDGDLDIGARRMNDVPASKRGVA 78 + ++NL + GEF+ +G SGCGKSTLL +IAGL + + G L G R + P+ +R A Sbjct: 28 LTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGGMLLCGNREIAG-PSPER--A 84 Query: 79 MVFQSYALYPHMSLYDNMAFGLK---IAGKSKAEIDAAVQHAAKILHIDHLLDRKPRALS 135 +VFQ+++L P ++ Y+N+ ++ A +SKAE+ A + A ++ + H ++P +S Sbjct: 85 VVFQNHSLLPWLTCYENVYLAVERVFSATESKAELKARTRAALALVGLSHAEQKRPNEIS 144 Query: 136 GGQRQRVAIGRAITRQPSVFLFDEPLSNLDAALRVKMRLEFAKLHDDLKTTMIYVTHDQI 195 GG +QRV I RA++ +P V L DEP LDA R ++ E K+ +T++ VTHD Sbjct: 145 GGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELLKIVAATGSTVVMVTHDVD 204 Query: 196 EAMTLADKIVVLSEGRIEQVG 216 EA+ L+D+IV+L+ G +G Sbjct: 205 EAVLLSDRIVMLTNGPSATIG 225 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 837,090 Number of extensions: 34261 Number of successful extensions: 314 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 220 Number of HSP's successfully gapped: 65 Length of query: 372 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 287 Effective length of database: 906,776 Effective search space: 260244712 Effective search space used: 260244712 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)