BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0417.p (759 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent... 1353 0.0 gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep ... 345 6e-96 gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [... 79 8e-16 >gi|152981250|ref|YP_001352009.1| DNA helicase II / ATP-dependent DNA helicase [Janthinobacterium sp. Marseille] Length = 760 Score = 1353 bits (3502), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/759 (84%), Positives = 699/759 (92%), Gaps = 1/759 (0%) Query: 1 MQNLLHNLNEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTF 60 MQNLLHNLN EQLAAVTLPAQ ALILAGAGSGKTRVLTTRIAWLIQTGQVSP+GILAVTF Sbjct: 1 MQNLLHNLNPEQLAAVTLPAQPALILAGAGSGKTRVLTTRIAWLIQTGQVSPAGILAVTF 60 Query: 61 TNKAAKEMTARLSAMLPINTRGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSA 120 TNKAAKEM RLSAM+PINTRGMWIGTFHGLCNRLLRAH++DA LPQTFQILD+QDQLS Sbjct: 61 TNKAAKEMMTRLSAMMPINTRGMWIGTFHGLCNRLLRAHYRDAALPQTFQILDSQDQLSM 120 Query: 121 IKRLLKQMNVDDEKYPPRNLMYFINSAKDQGLRAKDVDAYDDYNRKFVELYELYDQQCQR 180 IKRLLK N+DDEKYPPRNLMYFIN AKDQGLRA V+A+DDYNRK VELYE+YDQQCQR Sbjct: 121 IKRLLKANNIDDEKYPPRNLMYFINGAKDQGLRASAVEAFDDYNRKMVELYEIYDQQCQR 180 Query: 181 EGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMAGQHGAV 240 EGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQY WLKLMAG GAV Sbjct: 181 EGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYNWLKLMAGTQGAV 240 Query: 241 FAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIANNSKR 300 FAVGDDDQSIYAFRGANVGNM AFE+EF V+NLIKLEQNYRSHGHILDTAN LIANNSKR Sbjct: 241 FAVGDDDQSIYAFRGANVGNMSAFEREFKVENLIKLEQNYRSHGHILDTANTLIANNSKR 300 Query: 301 LGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWARSEIAILYRSNAQSRVL 360 LGKNL TDAGHGE VR+YEATSDLQEAQWIIE+ K LIAEG ARS+IA+LYRSNAQSRV+ Sbjct: 301 LGKNLHTDAGHGELVRIYEATSDLQEAQWIIEEAKSLIAEGAARSDIAVLYRSNAQSRVI 360 Query: 361 EHALFSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAKAM 420 EHALFSS IPYRVYGGQRFFERAE+KHAIAYLQLMDN HNDSAFLRVVNFPTRGIGA+++ Sbjct: 361 EHALFSSGIPYRVYGGQRFFERAEVKHAIAYLQLMDNPHNDSAFLRVVNFPTRGIGARSL 420 Query: 421 ESLQDAARQYGCSLYAAVPYVAGKAGSSLNAFIKLIEGARFETQHLPLPETVKVVLDLSG 480 E LQDAA+QYG SLYAAVPYVAGKAG+SL AFIKLIE ARFETQ+LPLPE V+VV+D SG Sbjct: 421 EQLQDAAKQYGISLYAAVPYVAGKAGTSLGAFIKLIEAARFETQNLPLPEMVQVVIDASG 480 Query: 481 LITHYRNEKEGADRIENLEQLVSAATLFVSEEGYGLDAPAFLGPQAQAAAGTAITTADGV 540 LITHY+NEKEGADRIENLEQ+VSAATLFVSEEG+G DAPA LGP +Q AG AI T DGV Sbjct: 481 LITHYQNEKEGADRIENLEQVVSAATLFVSEEGFGQDAPALLGPTSQQMAGPAIVTQDGV 540 Query: 541 EVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGM 600 E+LDADAPL +MSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITG+ Sbjct: 541 EILDADAPLPVVMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGL 600 Query: 601 EEGLFPHENSAKEEGGVEEERRLMYVAITRARKRLFMTFSQTRMLHGQTRYNMRSRFFDE 660 EEGLFPHENS KEE GVEEERRLMYVAITRA++RL+++FSQTRMLHGQ R+N++SRFFDE Sbjct: 601 EEGLFPHENSQKEEDGVEEERRLMYVAITRAKRRLYISFSQTRMLHGQMRFNLKSRFFDE 660 Query: 661 LPEQSIKWLSPKIAQHHWFANPKPAWDEVPEAGNNKIAQSFSRQTDSGWRIGQNVSHAKF 720 +PE S+KWLSPK+ QHHW A+PK AW++ AG N+IAQ+ ++ D GWRIG++V+HAKF Sbjct: 661 MPEDSLKWLSPKVQQHHWTAHPKAAWEDALGAGTNQIAQNIVKK-DIGWRIGESVAHAKF 719 Query: 721 GEGVIVNIEGGGGAARAQINFGKFGMKLLDLSVAKLEKI 759 GEGVIVNIEG GG ARA INFG+ GMKLLDLSVAKLEK+ Sbjct: 720 GEGVIVNIEGSGGNARAHINFGRHGMKLLDLSVAKLEKV 758 >gi|152980889|ref|YP_001355282.1| ATP-dependent DNA helicase Rep [Janthinobacterium sp. Marseille] Length = 686 Score = 345 bits (885), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 242/678 (35%), Positives = 358/678 (52%), Gaps = 59/678 (8%) Query: 6 HNLNEEQLAAVTLPAQSALILAGAGSGKTRVLTTRIAWLIQTGQVSPSGILAVTFTNKAA 65 H LN Q A+ L+LAGAGSGKTRV+TT+IA LI+ I A+TFTNKAA Sbjct: 10 HGLNAPQRDAIKYMDGPCLVLAGAGSGKTRVITTKIASLIEEHGYEARNIAALTFTNKAA 69 Query: 66 KEMTARLSAML--PINTRGMWIGTFHGLCNRLLRAHHKDAGLPQTFQILDTQDQLSAIKR 123 EM R++ +L P + + + TFH L ++LR K+ GL F I+D+ D S Sbjct: 70 LEMQERIAKLLKEPKQAKQLTVSTFHSLGVKILRQEAKELGLKDRFSIMDSDDCFS---- 125 Query: 124 LLKQMNVDDEKYPPRNLMYFINSAKDQGLRAKDV---DAYDDYNRKFVELYELYDQQCQR 180 L++ + V +K R + ++ K+ GL D A D+ + +Y Y Sbjct: 126 LVQDLAVTTDKQLIRRIQTAMSLWKN-GLIDPDTALNQAKDEDEAQAARIYRSYVATLSA 184 Query: 181 EGVVDFAELLLRTYELLSRNQPLREHYQSRFRHILVDEFQDTNDLQYKWLKLMA---GQH 237 VDF +L+ EL N+ +R+ +Q R R++LVDE+QDTN QY+ +KL+ G+ Sbjct: 185 YQAVDFDDLIRLPVELFRTNETVRDKWQRRLRYLLVDEYQDTNTCQYELVKLLVTGVGKK 244 Query: 238 GAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQNLIKLEQNYRSHGHILDTANELIANN 297 AVGDDDQ+IYA+RGA + N++ + +F ++KLEQNYRS IL AN +I+NN Sbjct: 245 PMFTAVGDDDQAIYAWRGATIENLKQLQVDFPDLKIVKLEQNYRSSTRILQAANSVISNN 304 Query: 298 SKRLGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIAEGWAR-SEIAILYRSNAQ 356 K K+L ++ G G+ V+V D QEA+ I + E A+ S+ AILYR N Q Sbjct: 305 PKLFEKSLWSEHGLGDPVKVMGMQDDDQEAEQIAIMLSAHRFERRAKFSDYAILYRGNHQ 364 Query: 357 SRVLEHALFSSAIPYRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIG 416 +RV+E AL IPY + GGQ FF+RAEIK I+YL+L+ N +D AF+R V P RG+G Sbjct: 365 ARVIEQALRKERIPYTISGGQSFFDRAEIKDIISYLRLIANQDDDPAFIRAVTTPKRGVG 424 Query: 417 AKAMESLQDAARQYGCSLYAAVPYVAGKAGSSLNAFIKLIEGARFETQHLPLPETVKVVL 476 +E+L A Q+ CSL+ AV F +E + Q PL E + Sbjct: 425 QSTLEALGAFAGQWQCSLFEAV-------------FKGGLESKLADRQLTPLREFGNFI- 470 Query: 477 DLSGLITHYRNEKEGADRIENLEQLVSAATLFVSEEGYGLDAPAFLGPQAQAAAGTAI-- 534 + L H E A ++++ + ++ E Y D F QAQ+ I Sbjct: 471 --NNLERHAHREGHAASLLDDMMKEINY-------EAYLYD--NFDDRQAQSKWQNVIDF 519 Query: 535 ------TTADGVEVLDADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAK 588 + G E D + L+ ++ + A ++ LE D + DA+++ T+H++K Sbjct: 520 TAWLKEKGSGGKEGNDPEKSLLD-LTQMVALMTM--LEGKDEEP----DAVRMSTLHASK 572 Query: 589 GLEFDAVFITGMEEGLFPHENSAKEE-----GGVEEERRLMYVAITRARKRLFMTFSQTR 643 GLEF VF+ G+EEG+ PH+ +EEERRLMYV ITRA++ L +++ + R Sbjct: 573 GLEFPHVFLVGVEEGILPHKGDPDAPVDTLGARIEEERRLMYVGITRAQRSLHVSWCKKR 632 Query: 644 MLHGQTRYNMRSRFFDEL 661 + + SRF E+ Sbjct: 633 KRAREHVHCDISRFIKEM 650 >gi|152981098|ref|YP_001352315.1| hypothetical protein mma_0625 [Janthinobacterium sp. Marseille] Length = 1083 Score = 79.3 bits (194), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 125/553 (22%), Positives = 209/553 (37%), Gaps = 131/553 (23%) Query: 172 ELYDQQCQREGVVDFAELLLRTYELLSRNQP---LREHYQSRFRHILVDEFQDTNDLQYK 228 E+Y + V DFA+L + Y LL+ + L+ +R++H+L+DEFQDTN LQ+ Sbjct: 363 EIYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARYKHVLLDEFQDTNPLQWS 422 Query: 229 ----WLKLMAGQ--HGAVFAVGDDDQSIYAFRGANVGNMQAFEQEFHVQ--NLIKLEQNY 280 WLK + ++F VGD QSIY FR A A + Q + ++ Q Sbjct: 423 IVQAWLKAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAREVLVAQGADFLRTNQTR 482 Query: 281 RSHGHILDTANE-LIANNSKRLGKNLRTDAGHGEQVRVYEATSDLQEAQWIIEQVKDLIA 339 R+ I+D NE AN L +AG Q+ + + ++ W ++D + Sbjct: 483 RNARGIVDVLNESFRANPIYTAQTTLSNEAGAVWQLPLVQQEKS-EKVVWSPANMRDPLT 541 Query: 340 E-----------------------------GWARSEIAILYRSNAQSRVLEHALFSSAIP 370 E G S++ +L + E AL + IP Sbjct: 542 EPREEEEDARRLQEGRAVAQAILRAREVTPGTKWSDVMLLVKKRTHLSAYERALREAGIP 601 Query: 371 YRVYGGQRFFERAEIKHAIAYLQLMDNLHNDSAFLRVVNFPTRGIGAKAMESLQ-DAARQ 429 + E E+ IA L + H++ A V+ P G + +L A + Sbjct: 602 FASDRRGGLLESLEVADLIALLTFLITPHDNLALAHVLKSPIMGATDNDLIALALRAEKT 661 Query: 430 YGCSLYAAV--PYVAGKAGSSLNAFIKLIEGARFETQHLPLPETVKVVLDLSGLITHYRN 487 + L+ A V +A S L +++L AR LP+ + + +L ++ Y Sbjct: 662 WWGRLHQAELNSEVLQRAVSLLEKWLEL--AAR-----LPVHDLLDRILHEGDVVARYAQ 714 Query: 488 EKEGADRIENLEQLVSAATLFVS-EEGYGLDAPAFLGP--QAQAAAGTAITTADGVEVLD 544 R + L + + L ++ + G P F+ + Q +A D Sbjct: 715 AASPLVRGQVLANIEAFTELALNLDAGRYPSLPKFIDALRRLQKSA-------------D 761 Query: 545 ADAPLVTIMSPLSAFLSHASLEAGDNQAQAGQDALQLMTVHSAKGLEFDAVFITGMEEGL 604 +DAP + + A DA +++T+H AKGLE D V + Sbjct: 762 SDAP-------------------DEAEIDASLDAARILTIHGAKGLEADIVVLLDAN--- 799 Query: 605 FPHENSAKEEGGV---------------------------------------EEERRLMY 625 H + A+++ GV +E+ L+Y Sbjct: 800 --HSDPARDDYGVLCEWKQEADAPNHFSVFGRQAERGAARDYLFAEEEQLKTQEDWNLLY 857 Query: 626 VAITRARKRLFMT 638 VA TRA+K L ++ Sbjct: 858 VATTRAKKLLIVS 870 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,592,935 Number of extensions: 62730 Number of successful extensions: 184 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 178 Number of HSP's successfully gapped: 4 Length of query: 759 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 669 Effective length of database: 888,291 Effective search space: 594266679 Effective search space used: 594266679 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)