BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0414.p
         (164 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979875|ref|YP_001353517.1| DNA-binding ferritin-like prote...    79   1e-16

>gi|152979875|ref|YP_001353517.1| DNA-binding ferritin-like protein
           (oxidative damage protectant) [Janthinobacterium sp.
           Marseille]
          Length = 192

 Score = 79.3 bits (194), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 10/162 (6%)

Query: 3   KKNVAAPSI---NIGINDKDRKKIADGLSKLLADTYTLYLKTHNFHWNVTGPMFNTLHLM 59
           K+   AP I   ++G+  K  K I+  ++ +LAD + LYLKT NFHW+++GP F   HL+
Sbjct: 23  KRRQRAPLITPSDMGV--KATKDISAAMNGVLADVFALYLKTKNFHWHMSGPHFRDYHLL 80

Query: 60  FEGQYNELALAVDLIAERIRALGYPAPGSYKEFAKLSSIPEADG---VPNAQEMIAQLVA 116
            + Q  ++    DLIAERIR +G     S    A+   I + D     PN  +M+A+L  
Sbjct: 81  LDEQAVQIYAMTDLIAERIRKVGGMTLRSIGHIARTQRIKDNDADYVEPN--DMLAELRE 138

Query: 117 GQEAVTRTARSIFPTVDAAADEPTADLLTQRMQLHEKNAWML 158
             + +T   R      D   D  T  L+   +   E+  W L
Sbjct: 139 DNKLLTSRLREAHGVCDEHHDIGTTSLIEVWIDETEQRTWFL 180


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 374,111
Number of extensions: 13792
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 164
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 88
Effective length of database: 940,049
Effective search space: 82724312
Effective search space used: 82724312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)