BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0412.p
         (286 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980029|ref|YP_001352906.1| phosphomethylpyrimidine kinase ...   163   9e-42
gi|152981526|ref|YP_001354648.1| phosphomethylpyrimidine kinase ...   100   2e-22

>gi|152980029|ref|YP_001352906.1| phosphomethylpyrimidine kinase
           [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  163 bits (413), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 114/277 (41%), Positives = 150/277 (54%), Gaps = 16/277 (5%)

Query: 2   IMSAAYRATPPCVLVFSGSDPSGGAGMQADIPAITALGCHPLSVPTALTVQDNVSVFAVH 61
           I +    ++ P VL  SG DPSGGAG+QADI A+ A GCH     TALTVQ++V V    
Sbjct: 6   ISTMNTSSSRPVVLCLSGHDPSGGAGLQADIEALMAQGCHAAPTVTALTVQNSVDVSDFR 65

Query: 62  ALDPELVRHQAQVLIDRFEIAAVKLGIAGSVENAQMIATLIRQLRQRNAQLPVVLDPVLA 121
            LD   V  QA+ +I    IA +KLG+ GSVE    +A ++    QR   +PVV DPVL 
Sbjct: 66  VLDSAWVLAQAEAVITDLPIAGIKLGMLGSVEMVDTVAGIL----QRLPNVPVVCDPVLR 121

Query: 122 NGKGDQLSRDDAARII-EPLYALATVITPNLNEARRLCGEVDA-ARQAALLMQRGCAHVL 179
            G G  L +D+    + E L  LAT++TPNL EAR L    +  A + A  +   C H+L
Sbjct: 122 AGGGGALGKDEVGYAMRERLLPLATIVTPNLPEARILAELPNGTADECAAKLLPFCQHLL 181

Query: 180 LKGGHGAQEEDVVNRWYGPAPAAAVPHPISASHSWRWTRLPDEFHGSGCTLAAALSACLA 239
           + GGHG  E+ V NR Y             +SH++   RLP  +HGSGCTLA+ L+  LA
Sbjct: 182 ITGGHG-DEQQVHNRLYSRD---------GSSHTFTCDRLPGSYHGSGCTLASTLAGRLA 231

Query: 240 RGLPMQQALDLAQRYTQHALSSAYAIAPGQRIPNRVP 276
            G    +A++ A  YT   L  A     GQ  P R+P
Sbjct: 232 LGEATVEAVENALAYTWRTLRDADRSGKGQHFPRRLP 268


>gi|152981526|ref|YP_001354648.1| phosphomethylpyrimidine kinase
           [Janthinobacterium sp. Marseille]
          Length = 282

 Score = 99.8 bits (247), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/273 (28%), Positives = 136/273 (49%), Gaps = 22/273 (8%)

Query: 10  TPPCVLVFSGSDPSGGAGMQADIPAITALGCHPLSVPTALTVQDNVSVFAVHALDPELVR 69
           T P +L F  +DP G  G+QAD+ +  A+GCH LSV T+L + D   +     +D + V 
Sbjct: 5   TSPLILTFGPTDPVGAVGIQADLASFAAMGCHGLSVITSLFIGDTARIEDTQIIDSDWVA 64

Query: 70  HQAQVLIDRFEIAAVKLGIAGSVENAQMIATLIRQLRQRNAQLPVVLDPVLA-------N 122
            QA+V+++   +AA K+G  GS+EN   IA ++         +P++ DP L+       +
Sbjct: 65  DQARVVLEDMPVAAFKVGAVGSIENVSAIAEIVSDY----PDIPLIFDPFLSSLPDQGPD 120

Query: 123 GKGDQLSRDDAARIIEPLYALATVITPNLNEARRLCGEVD-AARQAALLMQRGCAHVLLK 181
           G+   ++  +       +  L+TV    + E  R   E D  A  A  L++ GC +V + 
Sbjct: 121 GEDMLMATRELLIPQTTVLILSTVELARMAETWREPSEEDMMAVDAMRLIEMGCEYVFVT 180

Query: 182 GGHGAQEEDVVNRWYGPAPAAAVPHPISASHSWRWTRLPDEFHGSGCTLAAALSACLARG 241
           G   +   DV N  +    +  + H         W R+   + G+G TLAA ++A LA G
Sbjct: 181 GTP-SDLTDVANTLFD--ESGVIRHD-------NWQRISGSYSGAGGTLAATIAALLANG 230

Query: 242 LPMQQALDLAQRYTQHALSSAYAIAPGQRIPNR 274
           L + +A+  AQ +T  ++++A  +  G+ + +R
Sbjct: 231 LDVPEAVFEAQEFTIASIANAQRLGMGKLVLDR 263


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 679,111
Number of extensions: 27181
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 204
Effective length of database: 917,867
Effective search space: 187244868
Effective search space used: 187244868
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)