BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0410.p
         (66 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983196|ref|YP_001352006.1| thiamine biosynthesis protein T...    78   1e-16
gi|152982020|ref|YP_001352075.1| thiamine biosynthesis protein T...    76   4e-16

>gi|152983196|ref|YP_001352006.1| thiamine biosynthesis protein
          ThiS [Janthinobacterium sp. Marseille]
          Length = 67

 Score = 77.8 bits (190), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 49/66 (74%)

Query: 1  MQIELNGKPHPLPDGATLDQLIAGLSLAGKAVAVAVNRQVVPSAQWSLRALAEADKVDVV 60
          ++IELNG    +  G  +  LIA LSL+GKAVAVA+NR++VP  QW+ R L  AD++D+V
Sbjct: 2  LEIELNGAMRQVESGQNVADLIAELSLSGKAVAVAINREIVPRGQWAERQLQAADRIDIV 61

Query: 61 RAIGGG 66
          RAIGGG
Sbjct: 62 RAIGGG 67


>gi|152982020|ref|YP_001352075.1| thiamine biosynthesis protein
          ThiS [Janthinobacterium sp. Marseille]
          Length = 67

 Score = 75.9 bits (185), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 49/66 (74%)

Query: 1  MQIELNGKPHPLPDGATLDQLIAGLSLAGKAVAVAVNRQVVPSAQWSLRALAEADKVDVV 60
          + ++LNG+ + + DG+T+  L+A L+L GKA+AVA+NR+V+  + WS R L   D +D+V
Sbjct: 2  ITLQLNGRAYQVEDGSTVSDLVASLALTGKAIAVAINREVLSDSDWSQRRLLATDSIDIV 61

Query: 61 RAIGGG 66
          RAIGGG
Sbjct: 62 RAIGGG 67


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 171,457
Number of extensions: 5695
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 66
Length of database: 1,221,021
Length adjustment: 38
Effective length of query: 28
Effective length of database: 1,080,535
Effective search space: 30254980
Effective search space used: 30254980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 122 (51.6 bits)