BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0409.p
         (637 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980075|ref|YP_001352074.1| thiamine biosynthesis protein T...  1228   0.0  

>gi|152980075|ref|YP_001352074.1| thiamine biosynthesis protein ThiC
           [Janthinobacterium sp. Marseille]
          Length = 637

 Score = 1228 bits (3177), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/637 (91%), Positives = 609/637 (95%)

Query: 1   MNANPKFLSATATVDEAAVQPLPNSRKIYVTGSRPDIRVPMREISQADTPAMFGSEKNPP 60
           MNANPKFLSATATVDEA++QPLPNSRKIY+ GSRPDIRVPMREI+Q+DT A FG EKNPP
Sbjct: 1   MNANPKFLSATATVDEASIQPLPNSRKIYIEGSRPDIRVPMREITQSDTAASFGFEKNPP 60

Query: 61  ITVYDTSGPYTDPDVKIDIRAGLATPRLPWILERNDTEELAGPTSEYGQQRLNDPALAEL 120
           I VYDTSGPYTDP  KIDIR+GL TPRLPWILERNDTEEL GPTSEYG +RLNDP LAEL
Sbjct: 61  IYVYDTSGPYTDPAAKIDIRSGLDTPRLPWILERNDTEELPGPTSEYGIERLNDPKLAEL 120

Query: 121 RFNLHRKPRRAKAGANVTQMHYARRGIITPEMEFIAIRENLRRKEYLEQLKASGPMGNKL 180
           RFNLHRKPRRA AG NV+QMHYAR+GIITPEMEF+AIREN+ R+ YLE+LK SGP G KL
Sbjct: 121 RFNLHRKPRRALAGKNVSQMHYARQGIITPEMEFVAIRENMNRRAYLEELKKSGPKGEKL 180

Query: 181 ADLMGRQHPGQSFGASIPAEITPEFVRDEVARGRAIIPANINHPEVEPMIIGRNFLVKIN 240
           A+LMGRQHPGQSFGA+IP EIT EFVR E+ARGRAIIPANINHPE+EPMIIGRNFLVKIN
Sbjct: 181 AELMGRQHPGQSFGAAIPQEITAEFVRSEIARGRAIIPANINHPEIEPMIIGRNFLVKIN 240

Query: 241 ANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKNIHETREWIIRNSPVPIGTVPIY 300
           ANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGK+IHETREWIIRNSPVPIGTVPIY
Sbjct: 241 ANIGNSAVTSSIGEEVEKMTWAIRWGGDNVMDLSTGKHIHETREWIIRNSPVPIGTVPIY 300

Query: 301 QALEKVNGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVRLQYVPLTAKRMTGIVSRGGS 360
           QALEKVNGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGV L+YVP+TAKRMTGIVSRGGS
Sbjct: 301 QALEKVNGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRYVPMTAKRMTGIVSRGGS 360

Query: 361 IMAKWCLAHHRESFLYEHFEEICEIMKAYDVSFSLGDGLRPGSIYDANDEAQLGELRTLG 420
           IMAKWCLAHH+ESFLYEHFE+ICEIMKAYDVSFSLGDGLRPGSIYDANDEAQLGEL+TLG
Sbjct: 361 IMAKWCLAHHKESFLYEHFEDICEIMKAYDVSFSLGDGLRPGSIYDANDEAQLGELKTLG 420

Query: 421 ELTQIAWKHDVQVMIEGPGHVPMHLIKENMDLQLEQCHEAPFYTLGPLTTDIAPGYDHIT 480
           ELTQIAWKHDVQVMIEGPGHVPMHLIKENMDLQLEQCHEAPFYTLGPLTTDIAPGYDHIT
Sbjct: 421 ELTQIAWKHDVQVMIEGPGHVPMHLIKENMDLQLEQCHEAPFYTLGPLTTDIAPGYDHIT 480

Query: 481 SGIGAAQIGWYGTAMLCYVTPKEHLGLPNKTDVKDGIITYKIAAHAADLAKGHPGAQIRD 540
           SGIGAAQIGWYGTAMLCYVTPKEHLGLPNK DVKDGIITYKIAAHAADLAKGH GAQIRD
Sbjct: 481 SGIGAAQIGWYGTAMLCYVTPKEHLGLPNKVDVKDGIITYKIAAHAADLAKGHIGAQIRD 540

Query: 541 NALSKARFEFRWEDQFNIGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQEV 600
           NALSKARFEFRWEDQFNIGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQEV
Sbjct: 541 NALSKARFEFRWEDQFNIGLDPDKAREFHDETLPKDSAKVAHFCSMCGPHFCSMKITQEV 600

Query: 601 RDYAAKEGISEIDALKQGMQVKSVEFVKMGAEIYAKQ 637
           RDYAAK+GI+EI ALK GM+VK++EFVK G+EIY KQ
Sbjct: 601 RDYAAKQGITEIQALKAGMEVKAIEFVKSGSEIYQKQ 637


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,577,011
Number of extensions: 68833
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 140
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 548
Effective length of database: 891,988
Effective search space: 488809424
Effective search space used: 488809424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)