BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0407.p (939 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980087|ref|YP_001352005.1| valyl-tRNA synthetase [Janthino... 1587 0.0 gi|152980423|ref|YP_001352518.1| isoleucyl-tRNA synthetase [Jant... 183 4e-47 gi|152980718|ref|YP_001354586.1| leucyl-tRNA synthetase [Janthin... 91 4e-19 >gi|152980087|ref|YP_001352005.1| valyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 965 Score = 1587 bits (4110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 762/965 (78%), Positives = 828/965 (85%), Gaps = 27/965 (2%) Query: 1 MELAKSFEPAEIEKFWREEWEKRGYFAATTDAEKPSFSIQLPPPNVTGTLHMGHAFNQTI 60 MELAKSF+PA+IE FWR EWEKRGY+ ATTDA+KP+FSIQLPPPNVTGTLH+GH FNQTI Sbjct: 1 MELAKSFDPADIEAFWRTEWEKRGYYTATTDADKPAFSIQLPPPNVTGTLHLGHGFNQTI 60 Query: 61 MDGLTRYHRMRGYNTAWIPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEKVWEWKE 120 MDGLTRYHRMRG+NTAWIPGTDHAGIATQIVVERQLDAQK++RHDLGREKFVEKVWEWKE Sbjct: 61 MDGLTRYHRMRGFNTAWIPGTDHAGIATQIVVERQLDAQKITRHDLGREKFVEKVWEWKE 120 Query: 121 KSGSTITGQMRRMGASTDWAREYFTMDTKMSKAVTEVFVRLYEQGLIYRGKRLVNWDPVL 180 KSGSTITGQ+RR+GAS DW+REYFTMD SK VTEVFVRL EQGLIYRGKRLVNWDPVL Sbjct: 121 KSGSTITGQIRRLGASPDWSREYFTMDEPRSKTVTEVFVRLVEQGLIYRGKRLVNWDPVL 180 Query: 181 GTAVSDLEVVSEEEDGSMWHIKYPLADGSGH--------------------IVVATTRPE 220 GTAVSDLEVVSEEEDG MW+I+YPLADGS + IVVATTRPE Sbjct: 181 GTAVSDLEVVSEEEDGQMWNIRYPLADGSSYKFPIAFDEAGNATEWEERNFIVVATTRPE 240 Query: 221 TMLGDVAVAVDPTDERYAALVGKMIKLPLVGREIPIIQDEYVDKEFGTGCVKITPAHDFN 280 TMLGDVAVAVDPTD RY LVGK++ LPL R IPII D+YVDKEFGTGCVKITPAHDFN Sbjct: 241 TMLGDVAVAVDPTDTRYQHLVGKLLTLPLCERTIPIIADDYVDKEFGTGCVKITPAHDFN 300 Query: 281 DYQVGARHNLEMISVFTLKATINENAPEKYQGLDRFEARKQIVADLDALGLLEQVKPHKL 340 DY VG RHNL+ IS+ TL A INENAP YQGLDRF ARKQIVADLDA GLLE VKPHKL Sbjct: 301 DYAVGQRHNLDKISILTLDAKINENAPAAYQGLDRFAARKQIVADLDAQGLLELVKPHKL 360 Query: 341 MVPRGDRTGVVIEPMLTDQWFVAMSKPAPEGTFFPGKSIAETALEKVSSGEIKFVPENWT 400 MVPRGDRT VIEPMLTDQWFVAMSKPAPEGT+FPGKSI E ALEKV++GEIK +PENWT Sbjct: 361 MVPRGDRTNTVIEPMLTDQWFVAMSKPAPEGTYFPGKSITEVALEKVANGEIKMLPENWT 420 Query: 401 NTYNQWLNNIQDWCISRQLWWGHQIPAWYDEDGGIYVARTEEEAKKQAGGKA----VKRD 456 NTYNQWLNNIQDWCISRQLWWGHQIPAWYD +G +YVAR E+EAK +A + RD Sbjct: 421 NTYNQWLNNIQDWCISRQLWWGHQIPAWYDSEGKVYVARNEDEAKAKATAAGYNGPLTRD 480 Query: 457 EDVLDTWFSSALVPFSTLGWPEETPDYKLFLPSSVLVTGFDIIFFWVARMVMMTTHFTGK 516 EDVLDTWFSSALVPFSTLGWPEETPD+K FLPSSVLVTGFDIIFFWVARMVMMTTHFTGK Sbjct: 481 EDVLDTWFSSALVPFSTLGWPEETPDFKTFLPSSVLVTGFDIIFFWVARMVMMTTHFTGK 540 Query: 517 VPFDTVYVHGLVRDASGQKMSKSKGNTLDPIDLIDGIGVDELVAKRTVGLMNPKQAASIE 576 VPF TVYVHGL+RD+SGQKMSKSKGNTLDPIDLIDGI VDELVAKRTVGLMNPKQAASIE Sbjct: 541 VPFKTVYVHGLIRDSSGQKMSKSKGNTLDPIDLIDGINVDELVAKRTVGLMNPKQAASIE 600 Query: 577 KATRKEFADGIPAFGTDALRFTFASLATLGRNINFDLNRCEGYRNFCNKLWNATRFVLMN 636 K+TRKEF GI A+GTDALRFT AS A+LGRNINFDL+RCEGYRNFCNKLWNATRFVLMN Sbjct: 601 KSTRKEFPAGISAYGTDALRFTMASYASLGRNINFDLSRCEGYRNFCNKLWNATRFVLMN 660 Query: 637 TEGQDCGFDGH--VKGVCDKEKL-QFSKADRWIVSLLQRTEAEVEKGFADYRFDNIATAI 693 EG DCGF G CD FS+ADRWIVS LQRTEA++ KGFADYRFDNIA ++ Sbjct: 661 CEGHDCGFRDAPCAAGDCDPGGYTDFSQADRWIVSKLQRTEADIAKGFADYRFDNIAASL 720 Query: 694 YKFVWDEYCDWYLEMAKAQIQNGNEAQQRATRRTLLRVLESVLRLAHPVLPFITEQLWQS 753 Y+F+WDEYCDWYLE+AK QIQ G EAQQRATRRTLLRVLE++LRLAHPV+PFITE LWQ+ Sbjct: 721 YQFIWDEYCDWYLEVAKVQIQTGTEAQQRATRRTLLRVLETILRLAHPVIPFITEALWQT 780 Query: 754 VAPLTDRKPDPAGDSIMRQAYPRPDLEKVDAEAEAWVAQFKAYTDACRNLRGEMQLAPSL 813 VAPLT KP+PAGDSIM Q YP K+D +AE W+A+ KA TDACRNLRGEMQL+P+L Sbjct: 781 VAPLTGYKPNPAGDSIMLQPYPEAQAGKIDEQAENWMAELKAMTDACRNLRGEMQLSPAL 840 Query: 814 RVPLIVEATNAADAAAVESFLPYLQGLVRLSETTVVAQLPESPAPVAIVGEVKLMLKVEI 873 RVPLI+EA++ AA ++SF PYLQ L +LSE V +LPESPAPV+IVG KLMLKVEI Sbjct: 841 RVPLIMEASDPTQAARLQSFAPYLQALAKLSEVNVADKLPESPAPVSIVGTAKLMLKVEI 900 Query: 874 DVAAERERLGKEVTRLTAEIAKANGKLSNESFVARAPEAVVAQEKERVANFSATLEKVKE 933 DVAAERERL KE+ RL EI KAN KL NESFVARAP VVAQEKERVANFSATL K++E Sbjct: 901 DVAAERERLSKEIARLDGEITKANSKLGNESFVARAPAQVVAQEKERVANFSATLNKLRE 960 Query: 934 QLAKL 938 Q AKL Sbjct: 961 QFAKL 965 >gi|152980423|ref|YP_001352518.1| isoleucyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 958 Score = 183 bits (464), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 195/839 (23%), Positives = 327/839 (38%), Gaps = 158/839 (18%) Query: 10 AEIEKFWREEWEKRGYFAATTDAEK--PSFSIQLPPPNVTGTLHMGHAFNQTIMDGLTRY 67 A+ E W ++W+ + + A K P F + PP G +H+GHA N+ + D + + Sbjct: 35 AKREPQWVKQWQDQKVYEKIRKASKGRPKFILHDGPPYANGDIHLGHAVNKILKDMIVKT 94 Query: 68 HRMRGYNTAWIPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEKVWEWKEKSGSTIT 127 + G++ ++PG D G+ +I +E+Q +L + + K + + Sbjct: 95 RQFDGFDAPYVPGWDCHGMPIEIQIEKQFGK------NLPTAEVLSKARAYANEQVERQK 148 Query: 128 GQMRRMGASTDWAREYFTMDTKMSKAVTEVFVRLYEQGLIYRGKRLVNWDPVLGTAVSDL 187 R+G W + Y TMD L E+G +YRG + VNW G+A+++ Sbjct: 149 KDFIRLGVLGQWDKPYKTMDFGNEADELRALGSLLEKGYVYRGLKPVNWCFDCGSALAEA 208 Query: 188 EVVSEEEDGSMWHIKYPLAD---------------GSGHIVVATTRPETMLGDVAVAVDP 232 EV +++ + +P A+ G+ ++ TT P T+ + A+ V Sbjct: 209 EVEYQDKRDPAIDVGFPFAEPEKVAKAFGLAKLPTNKGYAIIWTTTPWTIPANQALNVH- 267 Query: 233 TDERYA---------------------------ALVGKMIKL------------------ 247 D YA L G+ I + Sbjct: 268 GDLPYALVNVVRNGVPQLLILAADLVGTVLQRCGLTGETIAICEGSALEGIRFKHPFADL 327 Query: 248 -PLVGREIPIIQDEYVDKEFGTGCVKITPAHDFNDYQVGARHNL---EMISVFTLKATIN 303 P RE PI YV + GTG V PA+ D+ H + E+I+ Sbjct: 328 DPGYNRESPIYLATYVAADSGTGIVHSAPAYGIEDFISCKSHGMRDDEIIAPVMGDGKYA 387 Query: 304 ENAPEKYQGLDRFEARKQIVADLDALGLLEQVK--PHKLMVPRGDRTGVVIEPMLTDQWF 361 P + GL +EA K I A LD +G L ++ H M +T ++ T QWF Sbjct: 388 SWLP-LFGGLTIWEASKPICAKLDEVGSLFKLVMFDHSYMHCWRHKTPIIYRA--TSQWF 444 Query: 362 VAMSKPAPEGTFFPGKSIAETALEKVSSGEIKFVPENWTNTYNQWLNNIQDWCISRQLWW 421 M P+ G ++ ETAL+ + E +F P + + N DW +SRQ W Sbjct: 445 AGMDV-MPKNQ---GATLRETALQAIE--ETEFFPSWGKARLHGMIANRPDWTLSRQRQW 498 Query: 422 GHQIPAWYDEDGGIYVARTEE--------------------EAKKQAGGKA--VKRDEDV 459 G + + ++ G RT E + K+ G A +++D Sbjct: 499 GVPMAFFVHKETGDLHPRTPELLEQIAQRVEKDGIEAWLTLDPKELLGADADMYLKNKDT 558 Query: 460 LDTWFSSALVPFSTLGWPEETPDYKLFLPSSVLVTGFDIIFFWVARMVMMTTHFTGKVPF 519 LD WF S + L + +L P+ + + G D W ++ ++ G+ P+ Sbjct: 559 LDVWFDSGCTHQTVL---RGSHKEELAFPADLYLEGSDQHRGWFHSSLLTSSMMNGRAPY 615 Query: 520 DTVYVHGLVRDASGQKMSKSKGNTLDPIDLIDGIGVDELVAKRTVGLMNPKQAASIEKAT 579 + HG D G+KMSKS GNTL P + D +G D L AS + + Sbjct: 616 KALLTHGFTVDGEGKKMSKSLGNTLAPQKISDTLGADILRL----------WIASTDYSG 665 Query: 580 RKEFADGIPAFGTDALRFTFASLATLGRNINFDLNRC-EGYRNFCNKLWNATRFVLMNTE 638 +D I L R E YR ++ N RF+L NT Sbjct: 666 ELSISDEI-------------------------LKRVTESYR----RIRNTVRFLLSNTS 696 Query: 639 GQDCGFDGHVKGVCDKEKLQFSKADRWIVSLLQRTEAEVEKGFADYRFDNIATAIYKFVW 698 D D + V D ++ DR+ V+ + +AE+ + Y F + + + + Sbjct: 697 DFDAAKD--LVPVADMLEI-----DRYAVAQMNAMQAEILAHYKVYEFHPVVSKLQMYCS 749 Query: 699 DEYCDWYLEMAKAQIQNG--NEAQQRATRRTLLRVLESVLRLAHPVLPFITEQLWQSVA 755 ++ +YL++ K ++ +R+ + + + S+LRL P+L F E+ W A Sbjct: 750 EDLGGFYLDILKDRLYTSGVTSHARRSAQSAIWHLTHSLLRLMAPILSFTAEEAWAVFA 808 >gi|152980718|ref|YP_001354586.1| leucyl-tRNA synthetase [Janthinobacterium sp. Marseille] Length = 881 Score = 90.5 bits (223), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 205/923 (22%), Positives = 332/923 (35%), Gaps = 239/923 (25%) Query: 3 LAKSFEPAEIEKFWREEWEKRGYFAATTDAEKPSFSI--------QLPPPNVTGTLHMGH 54 + + PAE+EK + W+ + A +A+ + LP P +G LHMGH Sbjct: 1 MQDKYSPAEVEKSAHDHWQAIDAYKAVENAKDKNGKDKKKFYACSMLPYP--SGKLHMGH 58 Query: 55 AFNQTIMDGLTRYHRMRGYNTAWIPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEK 114 N TI D + RY RM GYN G D G+ E A V Sbjct: 59 VRNYTINDVMYRYLRMNGYNVLMPMGWDAFGMPA----ENAAMANNVPPA---------- 104 Query: 115 VWEWKEKSGSTITGQMRRMGASTDWAREYFTMDTKMSKAVTEVFVRLYEQGLIYRGKRLV 174 +W + + QM MG + DW+RE + K +F+++ E+G+IY+ V Sbjct: 105 --QWTYANIDYMKTQMASMGLAIDWSREMTACRPEYYKWNQWMFLKMLEKGIIYKKTGTV 162 Query: 175 NWDPVLGTAVSDLEVVSEEEDGSMWHIKYPLADGSGHIVVATTRPETMLGDVAVAVDPTD 234 NWDP+ T +++ +V+ DG W SG ++ P A D + Sbjct: 163 NWDPIDQTVLANEQVI----DGRGWR--------SGALIEKREIPMY----YARITDYAE 206 Query: 235 ERYAALVGKMIKLPLVGREIPIIQDEYVDKEFGTGCVKITPAHDFNDYQVGARHNLEMIS 294 E + K+ P + I+Q ++ K G V+ HD + G N + Sbjct: 207 ELLDHVDNKLPGWP---ERVRIMQSNWIGKSTG---VRFAFTHDIA--EEGKLINDGKLW 258 Query: 295 VFTLKA------TINENAPEKYQGLDRFEARKQI-VADLDALGLLEQVKPHKL--MVPRG 345 VFT +A T APE L F A+ + D A L V + M +G Sbjct: 259 VFTTRADTIKGVTFCAVAPE--HALATFAAKSNPELTDFIAECKLGSVIEADMATMEKKG 316 Query: 346 DRTGVVIEPMLTDQ----WF-----------VAMSKPAPEGTFF---------------- 374 TG+ ++ LT Q W M PA + F Sbjct: 317 MPTGLFVKHPLTGQLVEVWVGNYVLITYGDGAVMGVPAHDERDFAFAQKYVLPIHPVIDV 376 Query: 375 PGKSIAETALEK----------VSSGEIKFVPENWTNTYNQWLNNI-------------- 410 PGK+ ++ A + ++SG+ + Y Q ++ I Sbjct: 377 PGKTFSDVAWHEWYGDKENGRCINSGKYDGL------NYQQAVDAIAADLAELGLGEKKI 430 Query: 411 ----QDWCISRQLWWGHQIPAWYDEDGG--------IYVARTEEEAKKQAG--------- 449 +DW ISRQ +WG IP + +D G + V E+ +G Sbjct: 431 TYRLRDWGISRQRYWGTPIPIIHCKDCGDVPVPEKDLPVVLPEDCVPDGSGNPLNKHEKF 490 Query: 450 --------GKAVKRDEDVLDTWFSSA------LVPFSTLGWPEETPDYKLFLPSSVLVTG 495 GK +R+ D +DT+ S+ P S+ + DY ++P + G Sbjct: 491 LHVDCPQCGKPARRETDTMDTFVDSSWYYMRYCSPNSSDAMVDSRNDY--WMPMDQYIGG 548 Query: 496 FD--IIFFWVARMVMMTTHFTGKV----PFDTVYVHGLV-------RDASGQK------- 535 + ++ AR G V PF + G+V DASG+K Sbjct: 549 IEHAVLHLLYARFWTKVMRDFGLVKFDEPFTNLLTQGMVLNETYFREDASGKKTWFNPAD 608 Query: 536 ---MSKSKGNTLDPIDLIDG----IGVDELVAKRTVGLMNPKQAASIEKATRKEFADGIP 588 KG + + DG IG E ++K ++P+ A I++ Sbjct: 609 VQLQLDDKGRPVSAVLSSDGKAVEIGGTEKMSKSKNNGIDPQ--AQIDQ----------- 655 Query: 589 AFGTDALRFTFASLATLGRNINFDLNRCEGYRNFCNKLWNATRFVLMNTEGQDCGFDGHV 648 +G D R + + + + EG F ++W G++ Sbjct: 656 -YGADTARLFTMFASPPEQTLEWSGAGVEGANRFLRRVWA-------------YGYNQAA 701 Query: 649 KGVCDKEKLQFSKADRWIVSLLQRTEAEVEKGFADYR---FDNIATAIYKFVWDEYCDWY 705 + V + F+ +L + T +++ DY+ ++ + +A K + Sbjct: 702 R-VANASAFDFATLPEAHKALRRETHKILQQADNDYKRIQYNTVVSASMKMLNT------ 754 Query: 706 LEMAKAQIQNGNEAQQRATRRTLLRVLESVLRLAHPVLPFITEQLWQSVAPLTDRKPDPA 765 LE AK A+ + L LR+ +PV P IT LWQ + D Sbjct: 755 LEAAKLD-------DSPASNAVISEGLSIFLRILNPVAPHITHALWQELGFAKDH----- 802 Query: 766 GDSIMRQAYPRPD---LEKVDAE 785 GD I+ +P+ D LE+ + E Sbjct: 803 GD-ILDAPWPQVDPAALEQAEIE 824 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.134 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,164,080 Number of extensions: 90118 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 244 Number of HSP's successfully gapped: 4 Length of query: 939 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 847 Effective length of database: 880,897 Effective search space: 746119759 Effective search space used: 746119759 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)