BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0404.p
         (278 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981810|ref|YP_001352003.1| 2-keto-4-pentenoate hydratase [...   357   e-100

>gi|152981810|ref|YP_001352003.1| 2-keto-4-pentenoate hydratase
           [Janthinobacterium sp. Marseille]
          Length = 280

 Score =  357 bits (917), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 171/278 (61%), Positives = 215/278 (77%)

Query: 1   MSSQALRYAHQLLDARAQSQIIPRISESEPLSVEDAYEIAHNIRNIRVAQGEQPIGRKIG 60
           MS+QA RYAHQLL ARA +Q IP +++ + L++ D Y++A  I +IR+AQGE PIGRKIG
Sbjct: 3   MSTQANRYAHQLLAARADAQQIPCLTKDDHLTIADGYDVAKCIVDIRIAQGETPIGRKIG 62

Query: 61  FVVRKNWKRYGIIDDPRIPTWAPMYDTTVRFAEDNHGAQSLTGAVQPRIEPEIVFKLGKS 120
           F  R+ W  YG  +    P WA MYD TVR++EDNHG Q LTGAVQPRIEPEIVFKL K+
Sbjct: 63  FTNRRIWPNYGEREPINAPIWAHMYDDTVRYSEDNHGLQDLTGAVQPRIEPEIVFKLAKA 122

Query: 121 PAPDASLDELADCLEWMAHGFEIVVCPFPKWEFTVADSIAAFGLHGTLIVGEPHVLSSAS 180
           P  +A+L+++ADC+EWMAHGFE+VVCPF  W+F  AD++AAFG HG LI+GEPH+LSSA+
Sbjct: 123 PPVNATLEDIADCIEWMAHGFELVVCPFADWKFEAADAVAAFGFHGALILGEPHMLSSAT 182

Query: 181 RHHLPQILASASVSLSCNTESSSVLRAAGFCNDEMDSPLHALWHLHQLLQKQSRFRQLQA 240
           R HL  IL +ASVSLS +  +   L +AGF ++ MDSP+HAL +LHQ LQ Q +F  L A
Sbjct: 183 RAHLADILTAASVSLSYSEGAEFRLHSAGFGSNVMDSPVHALLNLHQTLQTQPQFAPLAA 242

Query: 241 GEIITTGTWTDACPIEAGQTWTTAFSGLTLPGLTVSFV 278
           GEII TGT TDA P++ GQTW+TAFSG+ LPGLT+SFV
Sbjct: 243 GEIIATGTLTDAYPVKPGQTWSTAFSGVALPGLTLSFV 280


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.133    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 604,387
Number of extensions: 22627
Number of successful extensions: 50
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 196
Effective length of database: 917,867
Effective search space: 179901932
Effective search space used: 179901932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)