BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0402.p
         (192 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA heli...   296   6e-82

>gi|152980261|ref|YP_001352000.1| RuvA holliday junction DNA
           helicase [Janthinobacterium sp. Marseille]
          Length = 191

 Score =  296 bits (758), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 157/192 (81%), Positives = 175/192 (91%), Gaps = 1/192 (0%)

Query: 1   MIGRLSGILLEKLPPNLLVDCQGVGYEVAVPMSTYYNLPALGEKVTLLTHLAIREDAHIL 60
           MIGRLSG+LLEK PP LLVDC GVGYEV VPMST+YNLP LG+KV LLTHL +REDAHIL
Sbjct: 1   MIGRLSGVLLEKNPPQLLVDCNGVGYEVNVPMSTFYNLPGLGDKVVLLTHLTVREDAHIL 60

Query: 61  FGFGTAEERNTFKELIKISGVGARTALSILSGMSVSDLAQAVSLQEAGRLTRVPGIGKKT 120
           FGFGT EERN FK+L+KI+G+GARTALSILSGMSV+DLAQA+++QEAGRLT++PGIGKKT
Sbjct: 61  FGFGTNEERNVFKQLVKITGIGARTALSILSGMSVADLAQAITMQEAGRLTKIPGIGKKT 120

Query: 121 AERLLLELKGKLGADLGVAPGVVHSDATADILNALLALGYSDKEASLAMKQVPKEASVSD 180
           AERLLLELKGKLGADLGVA G V +DAT+DILNALLALGYSDKEA LA+KQVP    VSD
Sbjct: 121 AERLLLELKGKLGADLGVA-GAVATDATSDILNALLALGYSDKEAMLALKQVPAGTGVSD 179

Query: 181 GIKLALKALSKA 192
           GIKLALK+LSKA
Sbjct: 180 GIKLALKSLSKA 191


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.134    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 379,251
Number of extensions: 13493
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 192
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 114
Effective length of database: 932,655
Effective search space: 106322670
Effective search space used: 106322670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 127 (53.5 bits)