BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0392.p
         (545 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979939|ref|YP_001351998.1| bifunctional phosphoribosylamin...   942   0.0  

>gi|152979939|ref|YP_001351998.1| bifunctional
           phosphoribosylaminoimidazolecarboxamide
           formyltransferase/IMP cyclohydrolase [Janthinobacterium
           sp. Marseille]
          Length = 521

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/524 (86%), Positives = 487/524 (92%), Gaps = 4/524 (0%)

Query: 23  MIKQALISVSDKAGVLDFARALSAMGVNILSTGGTAKLLADNGVPVTEVADYTGFPEMLD 82
           MIKQALISVSDK GVL+FARALS MGVNILSTGGTAKLLA+NG+ VTEVADYTGFPEMLD
Sbjct: 1   MIKQALISVSDKTGVLEFARALSGMGVNILSTGGTAKLLAENGISVTEVADYTGFPEMLD 60

Query: 83  GRVKTLHPKVHGGILARRDFPEHVAALEQHGIPTIDMVVVNLYPFQQTVAKDECSLEDAI 142
           GRVKTLHPKVHGGILARRDF EHV+ALE+H IPTIDMVVVNLYPFQQTVA++ CSLEDAI
Sbjct: 61  GRVKTLHPKVHGGILARRDFAEHVSALEKHNIPTIDMVVVNLYPFQQTVAREHCSLEDAI 120

Query: 143 ENIDIGGPAMLRSSAKNHKDVIVICDPTDYDGVLAELKSG-GDLPYEKRFALAKKVFAHT 201
           ENIDIGGPAMLRSSAKNHKDVIVICDPTDY  VL EL +  G++ YE +F LAKKVFAHT
Sbjct: 121 ENIDIGGPAMLRSSAKNHKDVIVICDPTDYSQVLGELSANQGEVSYETKFTLAKKVFAHT 180

Query: 202 AQYDGAITNYFTSLGEDKQHSTRSAYPATLNLHFEKVQDMRYGENPHQSAAFYRDIKKVD 261
           AQYDGAITNYFTSLG DKQH+TRS+YPATLNLHFEKVQ+MRYGENPHQSAAFYR+     
Sbjct: 181 AQYDGAITNYFTSLGADKQHATRSSYPATLNLHFEKVQEMRYGENPHQSAAFYRESNPQV 240

Query: 262 GALANYTQLQGKELSFNNIADADAAWECVKSFDPALEAACVIIKHANPCGVAIGANPLEA 321
           GALANYTQLQGKELS+NNIADADAAWECVK+FD   E+ACVIIKHANPCGVA+GA+PLEA
Sbjct: 241 GALANYTQLQGKELSYNNIADADAAWECVKTFD---ESACVIIKHANPCGVAVGASPLEA 297

Query: 322 YSKALQTDPTSAFGGIIAFNREVDAAAAEAVAKQFLEVLIAPSFSAEAKQIFAAKQNVRL 381
           YSKALQTDPTSAFGGIIAFNRE+D  AAEAVAKQF+EVLIAPSFS +AKQIFA KQNVRL
Sbjct: 298 YSKALQTDPTSAFGGIIAFNRELDGNAAEAVAKQFVEVLIAPSFSEKAKQIFAGKQNVRL 357

Query: 382 LEIPLGKGLNGYDFKRVGGGLLVQSPDAKNVLLADVKVVSKKQPTQQQLQDLMFAWRVAK 441
           LEIPLG  +N +DFKRVGGGLLVQSPDAKNV+LA++KVVSKKQPT QQLQDLMFAWRVAK
Sbjct: 358 LEIPLGNAVNAHDFKRVGGGLLVQSPDAKNVVLAELKVVSKKQPTPQQLQDLMFAWRVAK 417

Query: 442 FVKSNAIVFCGNGMTLGVGAGQMSRIDSARIASIKAQNAGLTLAGSAVASDAFFPFRDGL 501
           FVKSNAIVFC NGMT+GVGAGQMSRIDSARIASIKAQNAGL+L G+AVASDAFFPFRDGL
Sbjct: 418 FVKSNAIVFCANGMTMGVGAGQMSRIDSARIASIKAQNAGLSLVGTAVASDAFFPFRDGL 477

Query: 502 DVVVDAGATCVIHPGGSMRDQEVVDAANERDVVMLLTGTRHFRH 545
           DVVV AGAT VIHPGGSMRDQEV+DAA+E+ VVML+TGTRHFRH
Sbjct: 478 DVVVAAGATSVIHPGGSMRDQEVIDAADEQGVVMLMTGTRHFRH 521


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,244,010
Number of extensions: 51476
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 457
Effective length of database: 895,685
Effective search space: 409328045
Effective search space used: 409328045
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)