BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0390.p
         (346 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981141|ref|YP_001351996.1| tRNA-dihydrouridine synthase [J...   571   e-164
gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A ...    81   1e-16

>gi|152981141|ref|YP_001351996.1| tRNA-dihydrouridine synthase
           [Janthinobacterium sp. Marseille]
          Length = 338

 Score =  571 bits (1472), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 269/334 (80%), Positives = 301/334 (90%)

Query: 5   VNIGPYSLRNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASDPRLWHSEKTSRRINH 64
           +NIGPYSL NNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAAS+PRLW S+K++RR NH
Sbjct: 1   MNIGPYSLPNNVFVAPMAGVTDRPFRQLCKQLGAGYAVSEMAASNPRLWASDKSTRRTNH 60

Query: 65  DGEMEPKAVQIAGADPAMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEEL 124
           DGE+EPKAVQIAGADP +LA+CAK+NV+RGAQIIDINMGCPVKKVCNSWCGSALLQ E L
Sbjct: 61  DGEVEPKAVQIAGADPVLLAECAKFNVDRGAQIIDINMGCPVKKVCNSWCGSALLQHESL 120

Query: 125 VARILDAVVSAVDVPVTLKFRTGWNRANKNALKIAARAEAAGIAMLTLHGRTRADGYSGE 184
           VA IL+AVV++V+VPVTLKFRTGW+RA+KNAL IA  AE +GIAMLTLHGRTRADGYSG+
Sbjct: 121 VAEILEAVVASVNVPVTLKFRTGWDRAHKNALNIARIAEQSGIAMLTLHGRTRADGYSGD 180

Query: 185 AEYETIAAVKAAVKIPVVANGDITTPEKAREVLRITGADAVMVGRAAQGRPWIFREIDHF 244
           AEYETI AVKAAV IPVVANGDITTPEKAR VL +TGADA+M+GRAAQGRPWIFREI+H+
Sbjct: 181 AEYETITAVKAAVSIPVVANGDITTPEKARYVLDVTGADAIMIGRAAQGRPWIFREIEHY 240

Query: 245 LRTGDFLPAPLVSEVEHLMAEHLQAHYAFYGEYLGVRTARKHIGWYVRDLPGGEQFRRSM 304
           LRTG +LPAP+++EV  LM EHL+AHYAFYGEYLGVRTARKHIGWYVR+L GGE FR+ M
Sbjct: 241 LRTGTYLPAPMIAEVRTLMDEHLRAHYAFYGEYLGVRTARKHIGWYVRELVGGEAFRQQM 300

Query: 305 NRIEDCGQQLQAVRQFFADQAAHGERLQYERAQE 338
           N++EDC QQL AV  FF  Q AHGERLQY    E
Sbjct: 301 NKLEDCEQQLAAVNTFFELQLAHGERLQYRPTAE 334


>gi|152980796|ref|YP_001354180.1| tRNA-dihydrouridine synthase A
           [Janthinobacterium sp. Marseille]
          Length = 344

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 135/315 (42%), Gaps = 23/315 (7%)

Query: 8   GPYSLRNNVFVAPMAGVTDRPFRQLCKQLG-AGYAVSEMAASDPRLWHSEKTSRRINHDG 66
           G Y  R  + VAPM   TDR  R   +Q+    +  +EM  +   L H +   R ++ + 
Sbjct: 11  GKYQGRR-ISVAPMMDWTDRHCRMFHRQITRHTWLYTEMVTTGA-LLHGD-VPRHLDFNE 67

Query: 67  EMEPKAVQIAGADPAMLADCAKYNVERGAQIIDINMGCPVKKVCNSWCGSALLQDEELVA 126
           E  P A+Q+ G++PA LA  AK   + G   +++N GCP ++V     G+ L+ +  LVA
Sbjct: 68  EEHPVALQLGGSEPADLAKSAKLGEQWGYDEVNLNCGCPSERVQKGAFGACLMNETGLVA 127

Query: 127 RILDAVVSAVDVPVTLKFRTGWNRANKNAL--KIAARAEAAGIAMLTLHGRTRA-DGYSG 183
             + A+  AV + VT+K R G +                 AG     +H R     G S 
Sbjct: 128 DCVKAMRDAVSIDVTVKHRIGIDDITSYDFVRDFVGTIADAGCNTFIVHARNAILKGLSP 187

Query: 184 EAE-------YETIAAVKAAVK-IPVVANGDITTPEKAREVLRITGADAVMVGRAAQGRP 235
           +         YE    +K     + ++ NG   T  +    L+    D VM+GR A   P
Sbjct: 188 KENREIPPLRYEFAYQLKKDFPALEIIINGGTKTVAEIDTHLQ--HVDGVMLGREAYHNP 245

Query: 236 WIFREIDHFLRTGDFLPAPLVSEVEHLMAEHLQAHYAFYGEY-----LGVRTARKHIGWY 290
           ++    D     GD   +   +EV   M  ++ A    +G+      L V +  +H+   
Sbjct: 246 FLMSTFDARY-YGDDATSKTRAEVVQAMIPYIHAQLQLHGKSEKGGGLKVNSITRHMLGL 304

Query: 291 VRDLPGGEQFRRSMN 305
           +  LP    FR++++
Sbjct: 305 MAGLPNSRAFRQTLS 319


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 747,338
Number of extensions: 28550
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 346
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 262
Effective length of database: 910,473
Effective search space: 238543926
Effective search space used: 238543926
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)