BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0387.p
         (214 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980161|ref|YP_001351995.1| phosphoglycerate mutase [Janthi...   234   4e-63
gi|152981106|ref|YP_001354912.1| phosphoglycerate mutase [Janthi...    65   3e-12

>gi|152980161|ref|YP_001351995.1| phosphoglycerate mutase
           [Janthinobacterium sp. Marseille]
          Length = 211

 Score =  234 bits (596), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 111/208 (53%), Positives = 143/208 (68%)

Query: 6   LIRHGETDWNVDKRLQGHIDIGLNQAGQRQVLALGEALAGEGIDAIFASDLQRARDTAQA 65
           +IRHGET+WNV KRLQGH D+ LN+ G RQ  ALG  L  E +DAI++SDL RA DTAQA
Sbjct: 1   MIRHGETEWNVGKRLQGHTDVALNREGVRQATALGRILLDEPLDAIYSSDLLRAYDTAQA 60

Query: 66  VADAAGLEVLIDAGLRERCYGAFEGLRHIEIEARYPDAYRQWKARDPDYRYPAGERIAET 125
           VA   G++VL + GLRERC+G FEGL H EI+ +YP+ Y  W+ RD D RYP GER AET
Sbjct: 61  VALPRGMKVLTEQGLRERCFGGFEGLNHPEIKEKYPEDYAAWQRRDIDARYPDGERRAET 120

Query: 126 MREFYERSVQAVQRALASGRYRKVAIVTHGGVLECVHHWASQTSFSQPRSFDIFNASVNR 185
           +REF  R+V  + R  ++  YRK+A+ THGGVL+ V+       +  PR FD+ NAS+NR
Sbjct: 121 LREFAARAVDCIARLASTPGYRKIAVFTHGGVLDSVYRRVKNMGYEHPRDFDVLNASINR 180

Query: 186 LHWDGQRAHIRSWGEIGHLQRETLDEVD 213
           + WDG+   I  W ++ HL   +LDE D
Sbjct: 181 VTWDGRDFQILQWADVSHLAHASLDESD 208


>gi|152981106|ref|YP_001354912.1| phosphoglycerate mutase
           [Janthinobacterium sp. Marseille]
          Length = 248

 Score = 65.1 bits (157), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 83/191 (43%), Gaps = 32/191 (16%)

Query: 1   MTDILLIRHGETDWNVDKRLQGHIDIGLNQAGQRQVLALGEAL--AGEGIDAIFASDLQR 58
           M  I+L+RHGE+ WN+D R  G  D+ L + G+ +    GE L  AG   D  ++S L+R
Sbjct: 1   MYKIVLMRHGESTWNLDNRFTGWADVDLTEKGRNEAKHAGELLREAGFTFDLAYSSVLKR 60

Query: 59  ARDTAQAVADAAGL---EVLIDAGLRERCYGAFEGLRHIEIEARY-PDAYRQWKAR---- 110
           A  T     D   L    V+ D  L ER YGA +G+   E   +Y  D   QW+      
Sbjct: 61  AIRTLWIALDEMDLMWIPVVCDWHLNERHYGALQGMNKAETAEKYGADQVLQWRRSYDIP 120

Query: 111 -------DP-----DYRY--------PAGERIAETMREFYERSVQAVQRALASGRYRKVA 150
                  DP     D RY        P GE + +T+          +  ++ +G  +++ 
Sbjct: 121 PKHLAEDDPRTMFDDPRYAHLQRAEIPLGECLKDTLLRVEPYWNDTIVPSIRAG--KQII 178

Query: 151 IVTHGGVLECV 161
           I  HG  L  +
Sbjct: 179 ISAHGNSLRAL 189


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 492,990
Number of extensions: 19056
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 214
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 135
Effective length of database: 928,958
Effective search space: 125409330
Effective search space used: 125409330
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 127 (53.5 bits)