BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0382.p
         (375 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981051|ref|YP_001351990.1| anhydro-N-acetylmuramic acid ki...   471   e-134

>gi|152981051|ref|YP_001351990.1| anhydro-N-acetylmuramic acid
           kinase [Janthinobacterium sp. Marseille]
          Length = 376

 Score =  471 bits (1212), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 240/373 (64%), Positives = 285/373 (76%), Gaps = 6/373 (1%)

Query: 8   SHLYIGLMSGTSLDGVDGVLARFHGQ-TLAATLAAAYVPFPEHLRADLMALQAAGPNEIE 66
           S L+IGLMSGTSLDGVDG+LA F    T+  TLAAAY+PFP+ LRA+LMALQ+ GP+EI 
Sbjct: 5   SSLFIGLMSGTSLDGVDGILAEFSADGTVRQTLAAAYIPFPDELRAELMALQSPGPDEIH 64

Query: 67  REAMAANALAVHYADCVAQLLLQTGKSAGDIRMVGVHGQTIRHRPELGFTRQTNNPALLA 126
           REA+AANAL  +YA+CVA LL Q   SA  +  +GVHGQTIRHRPE  +TRQ NNPALLA
Sbjct: 65  REALAANALVTYYAECVADLLQQAQLSAERVAAIGVHGQTIRHRPEHAYTRQINNPALLA 124

Query: 127 ELCGIDIVADLRSRDVAAGGQGAPLVPAFHRAIFGDATQSRVVVNIGGIANISILPAGED 186
           EL GID++ADLRSRD+AAGGQGAPLVPAFHRA+FG A ++RVVVNIGGIANISILP    
Sbjct: 125 ELTGIDVIADLRSRDIAAGGQGAPLVPAFHRALFGSADENRVVVNIGGIANISILPHNSA 184

Query: 187 GAS-GFDTGPGNALLDGWIQLHQQRSYDTDGDWGASGQVHAGLLRQLREEAFFHAAPPKS 245
            A  GFDTGPGN L+D WI  H  ++YD +G+W  +G+V A LL+ LR+E FF A PPKS
Sbjct: 185 AAVIGFDTGPGNVLMDAWIAQHNGQAYDANGEWAKTGKVDADLLKTLRDEPFFAAPPPKS 244

Query: 246 SGRDLFHLDWLQAALARTGEAIAANDVQATLAMLTASTIADAIRLHAADARQVYVCGGGV 305
           +GRDLFH  WL   LA     +A+ DVQ TLA+ TA+T+ADAI+L+A   + VYVCGGG 
Sbjct: 245 TGRDLFHPAWLAQKLADFPN-LASADVQTTLAVFTATTLADAIKLYAPQTQAVYVCGGGA 303

Query: 306 GNALLMRMLQQQLPPH---TSVQSTAVLGVAPQHVEALAFAWLARRFDLRLPGNLPAVTG 362
            N  L+ +L   L  H     V+STA LGVAP  VEALAFAWLA+RF +R PGNLP+VTG
Sbjct: 304 YNHYLLTLLHYALKLHQADIKVESTAALGVAPNQVEALAFAWLAQRFSVREPGNLPSVTG 363

Query: 363 ARGLRVLGALYPA 375
           ARG R+LGALYPA
Sbjct: 364 ARGFRILGALYPA 376


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 937,199
Number of extensions: 40566
Number of successful extensions: 139
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 290
Effective length of database: 906,776
Effective search space: 262965040
Effective search space used: 262965040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)