BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0381.p
         (155 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980786|ref|YP_001354229.1| hypothetical protein mma_2539 [...    70   5e-14

>gi|152980786|ref|YP_001354229.1| hypothetical protein mma_2539
           [Janthinobacterium sp. Marseille]
          Length = 174

 Score = 70.5 bits (171), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 56/133 (42%), Positives = 80/133 (60%), Gaps = 4/133 (3%)

Query: 27  PQQPYGAAPSSQDY---ERVASYSGTGVVEAIEVTH-KESNGVAGAVVGGVAGGLLGNAV 82
           P Q Y AA   Q         +Y+G G+V++I+    +      GA+ GGV GG+LGN V
Sbjct: 42  PAQGYPAASYPQQQYPAHNQGNYAGDGIVDSIQPMQIRNEGSGGGALAGGVVGGVLGNQV 101

Query: 83  GGGTGRTLATVAGAAGGAYAGNQVQRNNSAGHQVYNIRVRMNDGSLQTFAQEDNTDFRVG 142
           G G GR +AT AG  GGA  GNQ++RN S G Q Y + +R+N+G  Q+F  ++    +VG
Sbjct: 102 GKGGGRAVATAAGLIGGALLGNQIERNASPGQQYYQVNIRLNNGGFQSFNLQNPNGLQVG 161

Query: 143 DRVRLDNGRISRY 155
           +RVR++N +I RY
Sbjct: 162 ERVRVENNQIYRY 174


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 259,142
Number of extensions: 7711
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 2
Length of query: 155
Length of database: 1,221,021
Length adjustment: 76
Effective length of query: 79
Effective length of database: 940,049
Effective search space: 74263871
Effective search space used: 74263871
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 125 (52.8 bits)