BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0379.p
         (235 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic pep...   358   e-100
gi|152981042|ref|YP_001355059.1| penicillin-binding protein [Jan...    89   2e-19
gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A [...    82   4e-17

>gi|152982155|ref|YP_001354651.1| monofunctional biosynthetic
           peptidoglycan transglycosylase [Janthinobacterium sp.
           Marseille]
          Length = 231

 Score =  358 bits (918), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 182/231 (78%), Positives = 208/231 (90%)

Query: 1   MKSLRKLLFWIIVLPITLVLLLQLYFFVQIWWWKDHNPDSTSFMRHQLELLREKDPNAQL 60
           MK LRKLLFW+IV+P+ LVLLLQLYFF+QI WW +HNP STSFMRHQL +L+EK+P AQL
Sbjct: 1   MKILRKLLFWLIVVPVLLVLLLQLYFFLQIGWWVNHNPGSTSFMRHQLSILQEKNPKAQL 60

Query: 61  QFRWVPYARISNNLKRAIIASEDANFTEHDGIDWEALQKAYEKNEKKGKVVAGGSTITQQ 120
           + +W+PY RISNNLKRAIIASED+NF+EH+G+DW+ALQKAYEKN KKGKVVAGGSTITQQ
Sbjct: 61  KHKWIPYNRISNNLKRAIIASEDSNFSEHEGVDWDALQKAYEKNIKKGKVVAGGSTITQQ 120

Query: 121 LAKNLFLSGERSYLRKGQEFIITYMLEFLLDKQRIFEIYLNVVEWGNGVFGAEAAAQHYY 180
           LAKNLFLSG+RSYLRKGQE IITYMLE+ +DK+RIFEIYLNVVEWG G+FGAEAAAQHYY
Sbjct: 121 LAKNLFLSGDRSYLRKGQEVIITYMLEYWMDKERIFEIYLNVVEWGVGIFGAEAAAQHYY 180

Query: 181 RTTAAGLGAEQAARLAVMLPRPRYYDRNRGSGYLAARTSLILRRMNAATLP 231
             +AA LGA QAARLAVMLP PR+YD +RG+ YLA RT LILRRMN+A LP
Sbjct: 181 GVSAAQLGAPQAARLAVMLPNPRFYDGHRGTAYLARRTDLILRRMNSAALP 231


>gi|152981042|ref|YP_001355059.1| penicillin-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 762

 Score = 89.0 bits (219), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 84/156 (53%), Gaps = 1/156 (0%)

Query: 70  ISNNLKRAIIASEDANFTEHDGIDWEALQKAYEKNEKKGKVVAGGSTITQQLAKNLFLSG 129
           I + +K+A++A ED  F EH G+D+  + +A   N   G    G STITQQ+A+N FLS 
Sbjct: 76  IPDIMKKAVLAIEDDRFFEHGGVDYVGIVRAAVHN-LSGGARQGASTITQQVARNFFLSS 134

Query: 130 ERSYLRKGQEFIITYMLEFLLDKQRIFEIYLNVVEWGNGVFGAEAAAQHYYRTTAAGLGA 189
           E++  RK  E ++ + +E  L K +I E+Y+N +  G   +G  +AAQ YY      +  
Sbjct: 135 EQTLKRKIYEVLLAWKIEKNLSKDQILEVYMNQIYLGQRAYGFSSAAQIYYGKKLQQITI 194

Query: 190 EQAARLAVMLPRPRYYDRNRGSGYLAARTSLILRRM 225
            +AA LA +   P  Y+         AR   IL+RM
Sbjct: 195 AEAAMLAGLPKAPSAYNPVVNPKRAKARQQYILQRM 230


>gi|152981166|ref|YP_001353354.1| penicillin-binding protein 1A
           [Janthinobacterium sp. Marseille]
          Length = 807

 Score = 81.6 bits (200), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 64  WVPYARISNNLKRAIIASEDANFTEHDGIDWEALQKAYEKNEKKGKVVAGGSTITQQLAK 123
           +V  A I  ++K AIIA ED NF EH G+D   + +A   N  + +   G STIT Q+A+
Sbjct: 88  FVSVANIPASMKNAIIAIEDNNFYEHGGVDVLGVVRAGLANLVRSR-SQGASTITMQVAR 146

Query: 124 NLFLSGERSYLRKGQEFIITYMLEFLLDKQRIFEIYLNVVEWGNGVFGAEAAAQHYYRTT 183
              L+ +++Y RK QE I+ Y +E  L K +I E+Y+N +  G   +G  +AA+ Y+   
Sbjct: 147 TFLLTRKKTYSRKLQEVILAYRIEKNLTKDQILELYMNQIYLGERAYGFGSAARIYFGKP 206

Query: 184 AAGLGAEQAARLAVMLPRPRYYDRNRGSGYLAARTSLILRRMN 226
              L   ++A LA +   P   +          R   IL+RM+
Sbjct: 207 IQDLTIAESAMLAGIPKAPASANPVVNPKRATERQQYILKRMH 249


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 481,795
Number of extensions: 17686
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 155
Effective length of database: 925,261
Effective search space: 143415455
Effective search space used: 143415455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)