BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0378.p
         (271 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980054|ref|YP_001354652.1| shikimate 5-dehydrogenase [Jant...   349   9e-98

>gi|152980054|ref|YP_001354652.1| shikimate 5-dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 273

 Score =  349 bits (896), Expect = 9e-98,   Method: Compositional matrix adjust.
 Identities = 173/268 (64%), Positives = 203/268 (75%)

Query: 2   DEYVVIGNPIAHSKSPEIHARFAVQTGQQLHYDRLLVPLRGFKAAVQVFQRRGGCGANVT 61
           D Y VIGNPIAHSKSP+IHARFA QT Q L YDRLL PL GF A+VQ F R  G G NVT
Sbjct: 6   DHYAVIGNPIAHSKSPDIHARFAAQTQQDLKYDRLLAPLDGFLASVQEFIRNDGKGLNVT 65

Query: 62  VPFKLEAHALADQLTERARLAGAVNTLKFEGGRILGDNTDGAGLVTDIMSNAGQALAGRR 121
           VPFKLEA+A+A +L+ERAR AGAVNTLKFE G +LGDNTDG GLVTDI+ NAG A+AG+ 
Sbjct: 66  VPFKLEAYAMASRLSERARAAGAVNTLKFENGEMLGDNTDGVGLVTDIVRNAGVAVAGKT 125

Query: 122 ILLLGAGGAARGALLPLLQQKPRELVIVNRTATKAAELAKLFVEYGPVRSVAYAELDGVF 181
           +LLLGAGGAARG +LPLL +KP  LVI NRT +KA +LA+ F     +    +  LD  F
Sbjct: 126 VLLLGAGGAARGVILPLLHEKPARLVIANRTHSKALDLAERFAPQPTLEVSDFGALDDAF 185

Query: 182 DVIINATSASLSDDLPPLPVSVYGCETLAYDMMYGRQPTVFMHSAQQHGASVRDGLGMLV 241
           D++INAT+ASL+ ++PP+   V+   TLAYDMMYG  PT FM  A +HGA+VRDGLGMLV
Sbjct: 186 DIVINATAASLASEVPPISPRVFAKRTLAYDMMYGAAPTPFMQFAAEHGATVRDGLGMLV 245

Query: 242 EQAAEAFQWWRGVRPATAEVFASLRQQL 269
           EQAAE+F  WR VRP TA VF  LR +L
Sbjct: 246 EQAAESFYVWRNVRPETAAVFKELRDKL 273


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 545,927
Number of extensions: 20044
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 189
Effective length of database: 917,867
Effective search space: 173476863
Effective search space used: 173476863
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)