BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0377.p
         (293 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980914|ref|YP_001354653.1| hypothetical protein mma_2963 [...   382   e-107

>gi|152980914|ref|YP_001354653.1| hypothetical protein mma_2963
           [Janthinobacterium sp. Marseille]
          Length = 304

 Score =  382 bits (980), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/292 (61%), Positives = 231/292 (79%), Gaps = 3/292 (1%)

Query: 1   VNLFAQHRLLSIALGVSLLVHGLLLAVHFVAPDALRFKPSDPDLEVILVNAKHDKKPVQA 60
           V  F Q+R LS A+ +S+L H  LLAVHF  P+A +FKP+DP LEVILVNAKHDK+P++A
Sbjct: 9   VKSFFQNRFLSAAVTISVLAHAALLAVHFTPPEAFKFKPTDPGLEVILVNAKHDKQPLKA 68

Query: 61  QALAQANLDGGGNAEDGRAKSPLPDMQHVESGDSVKAAQRKVAELEQQQRKMLAQLQA-S 119
            ALAQANLDGGGNA+ GRAKSPLPD++  E GDS KAA+RK+ ELE+ Q+K+LAQ++  +
Sbjct: 69  DALAQANLDGGGNADAGRAKSPLPDLRKSEDGDSAKAARRKIEELERHQQKLLAQMEKKT 128

Query: 120 QQHVTSADQHQPTQ--APQPDARDLTETARAMARMEAEVAKDIAQYNKRPKKTQITPSTR 177
             H       +P +   PQ +A D+ ++A+A+ R EAE+++ I +YNKRPKKTQ+TPSTR
Sbjct: 129 AVHTPKVSDVEPVKDLPPQRNAVDMLDSAKALLRREAEISRSIEEYNKRPKKTQVTPSTR 188

Query: 178 EVGYAQYFKALQDRIEKVGTLNFPTRDGKKLYGELLVVIPVFQDGTLYERDGGVVVRSSS 237
           EVGYA Y+KALQDRIEK GTLNFP +DGKKLYG+L+V IP+FQDGT+Y ++GG  V  +S
Sbjct: 189 EVGYAAYYKALQDRIEKNGTLNFPQKDGKKLYGQLVVYIPIFQDGTIYMKEGGPRVERTS 248

Query: 238 GNAALDQAAVAIVRRSAPFGRFPENMRTSGKDDVWEVIVTFRFTREQGVQAQ 289
           GN ALDQAA+ IVRRSAPFG+FPENMR+ GKDDVWE+I  F FTR+  +Q +
Sbjct: 249 GNPALDQAALNIVRRSAPFGKFPENMRSVGKDDVWEIITRFNFTRDDALQTE 300


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 605,149
Number of extensions: 22735
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 211
Effective length of database: 917,867
Effective search space: 193669937
Effective search space used: 193669937
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)