BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0376.p
         (697 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982558|ref|YP_001354654.1| exoribonuclease R [Janthinobact...  1027   0.0  

>gi|152982558|ref|YP_001354654.1| exoribonuclease R
           [Janthinobacterium sp. Marseille]
          Length = 684

 Score = 1027 bits (2656), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/659 (75%), Positives = 567/659 (86%), Gaps = 7/659 (1%)

Query: 1   MNLLFEESGDFKAGSIMTQQGESYQVEMASGKRAKVKSRDALLQFAAPSPQELLQQAQAI 60
           MNL F+ESGDFKAG  M+QQGE+YQVEM SGKR+KV+S+D LLQFA+PSP E +  AQAI
Sbjct: 1   MNLFFDESGDFKAGVAMSQQGEAYQVEMPSGKRSKVRSKDVLLQFASPSPTEFMTDAQAI 60

Query: 61  AEEIDLDFLWEVAGEEEFGFTDLAAEYFGHAPLPPEAAGLLLRLHHAPIYFYKKGRGRYK 120
           A +IDLDFLWEVAGEEEFGF +L AEYFGH P P EAAGL+LRLH APIYFYKKG+GRYK
Sbjct: 61  AADIDLDFLWEVAGEEEFGFAELGAEYFGHEPKPHEAAGLILRLHAAPIYFYKKGKGRYK 120

Query: 121 AAPQASLQAALAGLEKKKQQLAAQAVYVEELKAHKLPEAFRPIALQLLFKPDKNGIEFKA 180
           AAP+ASL+AALAG+EKK+QQ   QA YV ELKA +LPEA RPI LQLLFKPDKN IE+KA
Sbjct: 121 AAPEASLKAALAGVEKKRQQALVQAQYVAELKAMRLPEAMRPIVLQLLFKPDKNSIEYKA 180

Query: 181 LDAAAKELQTTPQRLMLAAGGVASPKDLHYARFLYEFFPRGTGFPAIDIPTPPGDLPLAD 240
           LDAA  ELQ  PQRLMLA GG++S KDLH+++FL+E FP+GTGFP I +PT P +LP+AD
Sbjct: 181 LDAACTELQMAPQRLMLAVGGISSAKDLHFSKFLFESFPKGTGFPEIALPTLP-ELPVAD 239

Query: 241 VQAFSIDDVTTTEIDDALSVTRLPDGKLRVGIHIAAPALAIKRGDAIDAIARARMSTVYM 300
           VQAFSIDDVTTTEIDDA+SVTRLPDGK+ VGIHIAAP L IKR DA+D IAR R+STVYM
Sbjct: 240 VQAFSIDDVTTTEIDDAMSVTRLPDGKVCVGIHIAAPGLGIKRDDALDVIARQRLSTVYM 299

Query: 301 PGEKITMLPDDLVATYTLDAGAARPALSLYATLDAGTWEVLATETRAERVPIAANLRHND 360
           PG+KITMLPD+LV  YTL  G   PALSLY TLD   W V+++ETRAERVPIAANLRHND
Sbjct: 300 PGDKITMLPDELVEEYTLAEGRVCPALSLYVTLDPSDWSVISSETRAERVPIAANLRHND 359

Query: 361 LDELVTEEALADNRGDYPHKEEISLLWQWAQLLEQGRMAKRESFGLRPEQNNRVDFNFYV 420
           LD  VTE+ LA + GDYP+KE+I+LLW+WAQ+LEQGRMAKRESFGLRPEQNNRVDFNFYV
Sbjct: 360 LDAYVTEDNLAADVGDYPYKEDIALLWKWAQVLEQGRMAKRESFGLRPEQNNRVDFNFYV 419

Query: 421 DNDVVSIVRRRRGAPLDKIVAELMIFANSTWGKLMADHGVPGIYRAQGGGAG-GWAAKMQ 479
           +NDVVSI RR+RGAPLDKIVAEL I  NS+WGKL+ +HGVPGIYRAQGGG+G GWAAKMQ
Sbjct: 420 ENDVVSIQRRKRGAPLDKIVAELAILTNSSWGKLLHEHGVPGIYRAQGGGSGNGWAAKMQ 479

Query: 480 VRMVTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACVEHGVTAPLVAPFKPRDADL 539
           VRM THAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILAC+EHGVTAPLVAPFK RDADL
Sbjct: 480 VRMQTHAAPHQGLGVDQYAWSTSPLRRYTDLVNQWQILACIEHGVTAPLVAPFKQRDADL 539

Query: 540 FAIVSGFDAAYSGYADFQSTMERYWCLRWLAQENART----VEAVVLKDEILRLVDIPLV 595
           FAIVS FDAAYS YA FQ+ MERYWCLRWL+QE        VEA VLK+EILRLVDIPLV
Sbjct: 540 FAIVSAFDAAYSAYAAFQADMERYWCLRWLSQEKGEAETMKVEAAVLKEEILRLVDIPLV 599

Query: 596 LRMPGLPQLARGLQVKLDLLRWDEVDLSVEARLLEVPTAAAQALASDLGEE-DEELLEG 653
           +++ G+PQ+ARG QVKLDLLRWDEVDL+VEARLL++   A    A++L +E  ++++EG
Sbjct: 600 IKLSGMPQVARGSQVKLDLLRWDEVDLTVEARLLDIIQDAGATAAAELDDEMTDDMMEG 658


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,408,862
Number of extensions: 53903
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 154
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 607
Effective length of database: 888,291
Effective search space: 539192637
Effective search space used: 539192637
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 133 (55.8 bits)