BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0375.p
         (194 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980471|ref|YP_001354655.1| chorismate--pyruvate lyase [Jan...   147   6e-37

>gi|152980471|ref|YP_001354655.1| chorismate--pyruvate lyase
           [Janthinobacterium sp. Marseille]
          Length = 205

 Score =  147 bits (370), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 80/160 (50%), Positives = 103/160 (64%), Gaps = 1/160 (0%)

Query: 22  RAWLADPGSMTLKLKARTETFTVRLLRQRPGRILADEHEALCISARSRVVERDVILLADG 81
           R WL D  S+T+KL AR E F +R L Q+    LADE E + +  R  V ER+V+L  D 
Sbjct: 37  RGWLTDSMSLTMKLVARCERFRIRRLVQQHALPLADEFEKVGLPDRRLVQEREVLLCCDE 96

Query: 82  TPVVFGHTVLSTASVKSDWPFFSKLGTTPLGANLFFDPLVGRRPIQYARLSAGHPLMRRI 141
           TPVV+ HT++  ++  SDWPFF +LG   LG  LF DP V R  ++YARLSA HPL+ R 
Sbjct: 97  TPVVYAHTIVPLSATASDWPFFGRLGERSLGTTLFGDPRVWRGELEYARLSAQHPLVLRA 156

Query: 142 AQALPGSELPTSLLARRSLFTRRGGVLMVTDVFLPALEAL 181
           A AL G  LP+ L ARR L+ R  G+L+VT+VFLP L  +
Sbjct: 157 AAAL-GQALPSPLFARRCLYRRGRGLLLVTEVFLPNLATI 195


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.325    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 463,184
Number of extensions: 17905
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,221,021
Length adjustment: 78
Effective length of query: 116
Effective length of database: 932,655
Effective search space: 108187980
Effective search space used: 108187980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)